Escherichia coli str. K-12 substr. MG1655 (RNA + All evidences)

Annotated modules (79%)
Module 1.1Genes 351
GO termDescriptionq-value
GO:0006526 Arginine biosynthetic process 6.660975e-6
GO:0019740 Nitrogen utilization 9.757912e-6
GO:0006212 Uracil catabolic process 9.757912e-6
GO:0006865 Amino acid transport 1.317824e-4
GO:0019544 Arginine catabolic process to glutamate 4.378368e-4
GO:0019545 Arginine catabolic process to succinate 4.378368e-4
GO:0030980 Alpha-glucan catabolic process 6.002991e-4
GO:0051607 Defense response to virus 9.689302e-4
GO:0042956 Maltodextrin transport 1.707865e-3
GO:0006208 Pyrimidine nucleobase catabolic process 2.414017e-3
GO:0000160 Phosphorelay signal transduction system 6.562866e-3
GO:0015031 Protein transport 6.807083e-3
GO:0005978 Glycogen biosynthetic process 9.911437e-3
GO:0051454 Intracellular pH elevation 9.911437e-3
GO:0009098 Leucine biosynthetic process 1.042117e-2
GO:0006790 Sulfur compound metabolic process 1.042117e-2
GO:0046777 Protein autophosphorylation 1.447584e-2
GO:0009399 Nitrogen fixation 1.511782e-2
GO:0022610 Biological adhesion 1.511782e-2
GO:1901530 Response to hypochlorite 1.511782e-2
GO:0006569 Tryptophan catabolic process 1.511782e-2
GO:0042918 Alkanesulfonate transport 1.511782e-2
GO:0071973 Bacterial-type flagellum-dependent cell motility 1.608476e-2
GO:0045226 Extracellular polysaccharide biosynthetic process 1.727967e-2
GO:0006855 Drug transmembrane transport 1.727967e-2
GO:0070814 Hydrogen sulfide biosynthetic process 1.927173e-2
GO:0000103 Sulfate assimilation 1.927173e-2
GO:0006351 Transcription, DNA-templated 2.494383e-2
GO:0015847 Putrescine transport 3.189294e-2
GO:0009245 Lipid A biosynthetic process 3.493772e-2
GO:0006535 Cysteine biosynthetic process from serine 3.536401e-2
GO:0046618 Drug export 3.536401e-2
GO:2000144 Positive regulation of DNA-templated transcription, initiation 3.536401e-2
GO:0046677 Response to antibiotic 3.795410e-2
GO:0051692 Cellular oligosaccharide catabolic process 3.811759e-2
GO:0003333 Amino acid transmembrane transport 4.552101e-2
Module 1.3Genes 36
GO termDescriptionq-value
GO:0051604 Protein maturation 1.255240e-7
GO:2000142 Regulation of DNA-templated transcription, initiation 4.078191e-3
GO:0045454 Cell redox homeostasis 7.577680e-3
GO:2000143 Negative regulation of DNA-templated transcription, initiation 1.196221e-2
GO:0042773 ATP synthesis coupled electron transport 2.203443e-2
GO:0006464 Cellular protein modification process 3.340405e-2
Module 1.4Genes 47
GO termDescriptionq-value
GO:0019700 Organic phosphonate catabolic process 1.060369e-12
GO:0006817 Phosphate ion transport 5.428725e-11
GO:0042916 Alkylphosphonate transport 3.059925e-6
GO:0001407 Glycerophosphodiester transport 3.059925e-6
GO:0015794 Glycerol-3-phosphate transport 1.167783e-5
GO:0016036 Cellular response to phosphate starvation 6.636087e-5
GO:0015716 Organic phosphonate transport 1.109223e-4
GO:0015949 Nucleobase-containing small molecule interconversion 1.707865e-3
GO:0009089 Lysine biosynthetic process via diaminopimelate 8.543536e-3
GO:0019877 Diaminopimelate biosynthetic process 1.569475e-2
GO:0006260 DNA replication 4.335678e-2
Module 1.5Genes 21
GO termDescriptionq-value
GO:1902815 N,N'-diacetylchitobiose import 6.902869e-6
GO:0005975 Carbohydrate metabolic process 1.674959e-4
GO:0052777 Diacetylchitobiose catabolic process 6.525113e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 1.608476e-3
GO:0006048 UDP-N-acetylglucosamine biosynthetic process 1.707865e-3
GO:0034219 Carbohydrate transmembrane transport 1.796287e-2
GO:0006352 DNA-templated transcription, initiation 2.134434e-2
GO:0055072 Iron ion homeostasis 4.245800e-2
GO:0055072 Iron ion homeostasis 4.293261e-2
Module 1.6Genes 21
GO termDescriptionq-value
GO:0006113 Fermentation 6.302482e-7
GO:0051191 Prosthetic group biosynthetic process 8.495556e-4
GO:0006084 Acetyl-CoA metabolic process 8.495556e-4
GO:0009605 Response to external stimulus 8.495556e-4
GO:0009061 Anaerobic respiration 1.901828e-3
GO:0006119 Oxidative phosphorylation 6.540694e-3
GO:0006099 Tricarboxylic acid cycle 9.064604e-3
GO:0016036 Cellular response to phosphate starvation 1.187210e-2
GO:0019646 Aerobic electron transport chain 1.720837e-2
GO:0044780 Bacterial-type flagellum assembly 2.995222e-2
Module 1.8Genes 5
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 9.757912e-6
GO:0019294 Keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 4.075577e-2
Module 1.9Genes 6
GO termDescriptionq-value
GO:0019698 D-galacturonate catabolic process 1.407428e-6
GO:0042840 D-glucuronate catabolic process 4.552101e-2
Module 1.10Genes 9
GO termDescriptionq-value
GO:0006526 Arginine biosynthetic process 6.660975e-6
GO:0019740 Nitrogen utilization 9.757912e-6
GO:0006212 Uracil catabolic process 9.757912e-6
GO:0006865 Amino acid transport 1.317824e-4
GO:0019544 Arginine catabolic process to glutamate 4.378368e-4
GO:0019545 Arginine catabolic process to succinate 4.378368e-4
GO:0030980 Alpha-glucan catabolic process 6.002991e-4
GO:0051607 Defense response to virus 9.689302e-4
GO:0042956 Maltodextrin transport 1.707865e-3
GO:0006208 Pyrimidine nucleobase catabolic process 2.414017e-3
GO:0000160 Phosphorelay signal transduction system 6.562866e-3
GO:0015031 Protein transport 6.807083e-3
GO:0005978 Glycogen biosynthetic process 9.911437e-3
GO:0051454 Intracellular pH elevation 9.911437e-3
GO:0009098 Leucine biosynthetic process 1.042117e-2
GO:0006790 Sulfur compound metabolic process 1.042117e-2
GO:0046777 Protein autophosphorylation 1.447584e-2
GO:0009399 Nitrogen fixation 1.511782e-2
GO:0022610 Biological adhesion 1.511782e-2
GO:1901530 Response to hypochlorite 1.511782e-2
GO:0006569 Tryptophan catabolic process 1.511782e-2
GO:0042918 Alkanesulfonate transport 1.511782e-2
GO:0071973 Bacterial-type flagellum-dependent cell motility 1.608476e-2
GO:0045226 Extracellular polysaccharide biosynthetic process 1.727967e-2
GO:0006855 Drug transmembrane transport 1.727967e-2
GO:0070814 Hydrogen sulfide biosynthetic process 1.927173e-2
GO:0000103 Sulfate assimilation 1.927173e-2
GO:0006351 Transcription, DNA-templated 2.494383e-2
GO:0015847 Putrescine transport 3.189294e-2
GO:0009245 Lipid A biosynthetic process 3.493772e-2
GO:0006535 Cysteine biosynthetic process from serine 3.536401e-2
GO:0046618 Drug export 3.536401e-2
GO:2000144 Positive regulation of DNA-templated transcription, initiation 3.536401e-2
GO:0046677 Response to antibiotic 3.795410e-2
GO:0051692 Cellular oligosaccharide catabolic process 3.811759e-2
GO:0003333 Amino acid transmembrane transport 4.552101e-2
Module 1.11Genes 15
GO termDescriptionq-value
GO:0006635 Fatty acid beta-oxidation 2.571671e-10
GO:0006097 Glyoxylate cycle 1.422326e-6
GO:0006099 Tricarboxylic acid cycle 3.311086e-3
Module 1.12Genes 42
GO termDescriptionq-value
GO:0009103 Lipopolysaccharide biosynthetic process 1.042117e-2
GO:0009243 O antigen biosynthetic process 1.651878e-2
Module 1.13Genes 10
GO termDescriptionq-value
GO:0009086 Methionine biosynthetic process 1.926894e-6
GO:0006730 One-carbon metabolic process 1.321673e-5
GO:0046654 Tetrahydrofolate biosynthetic process 6.258234e-3
GO:0051289 Protein homotetramerization 4.075577e-2
GO:0035999 Tetrahydrofolate interconversion 4.075577e-2
GO:0051409 Response to nitrosative stress 4.075577e-2
Module 1.14Genes 39
GO termDescriptionq-value
GO:0009432 SOS response 2.069288e-39
GO:0006281 DNA repair 5.579150e-14
GO:0006974 Cellular response to DNA damage stimulus 1.198415e-9
GO:0006289 Nucleotide-excision repair 6.902869e-6
GO:0032508 DNA duplex unwinding 3.828262e-5
GO:0000725 Recombinational repair 5.561632e-4
GO:0019985 Translesion synthesis 2.967243e-3
GO:0006200 Obsolete ATP catabolic process 1.785805e-2
GO:0006261 DNA-dependent DNA replication 2.280036e-2
GO:0006298 Mismatch repair 3.480399e-2
GO:0006310 DNA recombination 4.096866e-2
Module 1.15Genes 10
GO termDescriptionq-value
GO:0019521 D-gluconate metabolic process 3.664230e-12
GO:0046183 L-idonate catabolic process 1.041381e-8
GO:0046177 D-gluconate catabolic process 4.432298e-8
Module 1.16Genes 27
GO termDescriptionq-value
GO:0016226 Iron-sulfur cluster assembly 1.824159e-4
GO:0009060 Aerobic respiration 5.091668e-3
GO:0006099 Tricarboxylic acid cycle 1.148566e-2
Module 1.17Genes 9
GO termDescriptionq-value
GO:0019629 Propionate catabolic process, 2-methylcitrate cycle 2.826534e-8
GO:0019679 Propionate metabolic process, methylcitrate cycle 2.280796e-4
Module 1.18Genes 5
GO termDescriptionq-value
GO:0008643 Carbohydrate transport 4.295093e-3
GO:0006012 Galactose metabolic process 2.641337e-2
Module 1.19Genes 9
GO termDescriptionq-value
GO:0015888 Thiamine transport 6.425543e-7
GO:0019272 L-alanine biosynthetic process from pyruvate 3.340405e-2
GO:0006523 Alanine biosynthetic process 3.340405e-2
GO:0015758 Glucose transport 4.176323e-2
GO:0015767 Lactose transport 4.176323e-2
GO:0030632 D-alanine biosynthetic process 4.176323e-2
Module 1.21Genes 1
GO termDescriptionq-value
GO:0009266 Response to temperature stimulus 1.870782e-2
Module 1.22Genes 4
GO termDescriptionq-value
GO:0034355 NAD salvage 1.461462e-2
GO:0019284 L-methionine biosynthetic process from S-adenosylmethionine 1.461462e-2
GO:0034628 'de novo' NAD biosynthetic process from aspartate 2.280036e-2
Module 1.23Genes 5
GO termDescriptionq-value
GO:0043708 Cell adhesion involved in biofilm formation 7.821314e-4
GO:0006885 Regulation of pH 2.641337e-2
GO:0006883 Cellular sodium ion homeostasis 2.641337e-2
Module 1.24Genes 2
GO termDescriptionq-value
GO:0010273 Detoxification of copper ion 2.641337e-2
GO:0034220 Ion transmembrane transport 3.340405e-2
Module 1.25Genes 6
GO termDescriptionq-value
GO:0019262 N-acetylneuraminate catabolic process 3.059925e-6
GO:0005975 Carbohydrate metabolic process 3.123005e-2
Module 1.28Genes 9
GO termDescriptionq-value
GO:0019324 L-lyxose metabolic process 6.902869e-6
GO:0034219 Carbohydrate transmembrane transport 8.466255e-5
GO:0019572 L-arabinose catabolic process 3.536401e-2
GO:0019323 Pentose catabolic process 3.536401e-2
Module 1.30Genes 1
GO termDescriptionq-value
GO:0051604 Protein maturation 1.255240e-7
GO:2000142 Regulation of DNA-templated transcription, initiation 4.078191e-3
GO:0045454 Cell redox homeostasis 7.577680e-3
GO:2000143 Negative regulation of DNA-templated transcription, initiation 1.196221e-2
GO:0042773 ATP synthesis coupled electron transport 2.203443e-2
GO:0006464 Cellular protein modification process 3.340405e-2
Module 1.31Genes 2
GO termDescriptionq-value
GO:0006119 Oxidative phosphorylation 2.641337e-2
GO:0019646 Aerobic electron transport chain 3.811759e-2
Module 1.32Genes 18
GO termDescriptionq-value
GO:0006189 'de novo' IMP biosynthetic process 1.950623e-13
GO:0006164 Purine nucleotide biosynthetic process 1.402500e-4
GO:0009446 Putrescine biosynthetic process 7.884917e-4
GO:0009156 Ribonucleoside monophosphate biosynthetic process 7.884917e-4
GO:0008295 Spermidine biosynthetic process 6.090921e-3
GO:0044205 'de novo' UMP biosynthetic process 8.415687e-3
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.371658e-2
GO:0006541 Glutamine metabolic process 2.075518e-2
Module 1.33Genes 23
GO termDescriptionq-value
GO:0042128 Nitrate assimilation 3.163579e-6
GO:0018378 Cytochrome c-heme linkage via heme-L-cysteine 6.902869e-6
GO:0009061 Anaerobic respiration 5.035803e-5
GO:0045333 Cellular respiration 2.410362e-4
GO:0019645 Anaerobic electron transport chain 3.122505e-3
Module 1.35Genes 12
GO termDescriptionq-value
GO:0015031 Protein transport 6.122912e-5
GO:0009061 Anaerobic respiration 3.097639e-3
GO:0071249 Cellular response to nitrate 3.811759e-2
GO:0071250 Cellular response to nitrite 3.811759e-2
GO:0042939 Tripeptide transport 3.811759e-2
Module 1.36Genes 5
GO termDescriptionq-value
GO:0008643 Carbohydrate transport 2.804721e-3
GO:0019303 D-ribose catabolic process 2.280036e-2
Module 1.37Genes 4
GO termDescriptionq-value
GO:0071421 Manganese ion transmembrane transport 1.461462e-2
GO:2000144 Positive regulation of DNA-templated transcription, initiation 2.280036e-2
Module 1.38Genes 1
GO termDescriptionq-value
GO:0009082 Branched-chain amino acid biosynthetic process 1.196221e-2
Module 1.39Genes 3
GO termDescriptionq-value
GO:0044206 UMP salvage 1.870782e-2
GO:0009166 Nucleotide catabolic process 2.494383e-2
Module 1.40Genes 3
GO termDescriptionq-value
GO:0019700 Organic phosphonate catabolic process 1.060369e-12
GO:0006817 Phosphate ion transport 5.428725e-11
GO:0042916 Alkylphosphonate transport 3.059925e-6
GO:0001407 Glycerophosphodiester transport 3.059925e-6
GO:0015794 Glycerol-3-phosphate transport 1.167783e-5
GO:0016036 Cellular response to phosphate starvation 6.636087e-5
GO:0015716 Organic phosphonate transport 1.109223e-4
GO:0015949 Nucleobase-containing small molecule interconversion 1.707865e-3
GO:0009089 Lysine biosynthetic process via diaminopimelate 8.543536e-3
GO:0019877 Diaminopimelate biosynthetic process 1.569475e-2
GO:0006260 DNA replication 4.335678e-2
Module 1.42Genes 2
GO termDescriptionq-value
GO:0032025 Response to cobalt ion 1.461462e-2
GO:0010045 Response to nickel cation 1.870782e-2
GO:0006824 Cobalt ion transport 2.280036e-2
GO:0035444 Nickel cation transmembrane transport 2.641337e-2
Module 1.43Genes 9
GO termDescriptionq-value
GO:0006096 Glycolytic process 4.623899e-4
GO:0006090 Pyruvate metabolic process 8.495556e-4
GO:0055114 Oxidation-reduction process 2.372904e-3
GO:0009107 Lipoate biosynthetic process 3.536401e-2
GO:0009249 Protein lipoylation 4.552101e-2
Module 1.44Genes 3
GO termDescriptionq-value
GO:0046677 Response to antibiotic 1.824159e-4
GO:0009636 Response to toxic substance 3.493772e-2
Module 1.45Genes 8
GO termDescriptionq-value
GO:0000162 Tryptophan biosynthetic process 3.499750e-14
GO:0009073 Aromatic amino acid family biosynthetic process 8.466255e-5
Module 1.46Genes 1
GO termDescriptionq-value
GO:0042493 Response to drug 4.075577e-2
Module 1.47Genes 6
GO termDescriptionq-value
GO:0015796 Galactitol transport 2.157146e-7
GO:0019402 Galactitol metabolic process 7.185994e-7
GO:0019404 Galactitol catabolic process 1.916665e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 6.908435e-4
GO:2001059 D-tagatose 6-phosphate catabolic process 4.075577e-2
Module 1.50Genes 1
GO termDescriptionq-value
GO:1902815 N,N'-diacetylchitobiose import 6.902869e-6
GO:0005975 Carbohydrate metabolic process 1.674959e-4
GO:0052777 Diacetylchitobiose catabolic process 6.525113e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 1.608476e-3
GO:0006048 UDP-N-acetylglucosamine biosynthetic process 1.707865e-3
GO:0034219 Carbohydrate transmembrane transport 1.796287e-2
GO:0006352 DNA-templated transcription, initiation 2.134434e-2
GO:0055072 Iron ion homeostasis 4.245800e-2
GO:0055072 Iron ion homeostasis 4.293261e-2
Module 1.51Genes 6
GO termDescriptionq-value
GO:0006829 Zinc ion transport 5.692974e-4
GO:0006412 Translation 2.129681e-2
GO:0034224 Cellular response to zinc ion starvation 2.641337e-2
Module 1.52Genes 6
GO termDescriptionq-value
GO:0009165 Nucleotide biosynthetic process 2.944544e-2
GO:0006571 Tyrosine biosynthetic process 2.944544e-2
GO:0009257 10-formyltetrahydrofolate biosynthetic process 2.944544e-2
GO:0033585 L-phenylalanine biosynthetic process from chorismate via phenylpyruvate 2.944544e-2
GO:0015828 Tyrosine transport 2.944544e-2
GO:0006532 Aspartate biosynthetic process 2.944544e-2
GO:0046417 Chorismate metabolic process 2.944544e-2
GO:0015827 Tryptophan transport 3.811759e-2
GO:0071806 Protein transmembrane transport 3.811759e-2
GO:0009094 L-phenylalanine biosynthetic process 3.811759e-2
GO:0015823 Phenylalanine transport 3.811759e-2
GO:0019439 Aromatic compound catabolic process 4.552101e-2
Module 1.53Genes 3
GO termDescriptionq-value
GO:0033228 Cysteine export 1.461462e-2
GO:0034775 Glutathione transmembrane transport 1.461462e-2
GO:0006869 Lipid transport 1.461462e-2
GO:0046688 Response to copper ion 4.293261e-2
Module 1.57Genes 1
GO termDescriptionq-value
GO:0045717 Negative regulation of fatty acid biosynthetic process 8.776507e-3
GO:0006633 Fatty acid biosynthetic process 2.944544e-2
Module 1.58Genes 1
GO termDescriptionq-value
GO:0043171 Peptide catabolic process 1.196221e-2
GO:0042150 Plasmid recombination 1.196221e-2
GO:0006276 Plasmid maintenance 2.134434e-2
GO:0031564 Transcription antitermination 2.641337e-2
Module 1.61Genes 1
GO termDescriptionq-value
GO:0008643 Carbohydrate transport 3.493772e-2
Module 1.66Genes 1
GO termDescriptionq-value
GO:0010628 Positive regulation of gene expression 1.461462e-2
GO:0009089 Lysine biosynthetic process via diaminopimelate 2.859931e-2
Module 2Genes 15
GO termDescriptionq-value
GO:0019569 L-arabinose catabolic process to xylulose 5-phosphate 6.040010e-6
GO:0019568 Arabinose catabolic process 6.040010e-6
GO:0015752 D-ribose transport 6.040010e-6
GO:0042882 L-arabinose transport 6.040010e-6
GO:0015753 D-xylose transport 1.980397e-5
GO:0042843 D-xylose catabolic process 5.943469e-4
GO:0046835 Carbohydrate phosphorylation 2.919144e-2
Module 3Genes 13
GO termDescriptionq-value
GO:0006144 Purine nucleobase metabolic process 1.214773e-9
GO:0009442 Allantoin assimilation pathway 3.115878e-8
GO:0009436 Glyoxylate catabolic process 1.277955e-5
GO:0046296 Glycolate catabolic process 5.556158e-5
GO:0006573 Valine metabolic process 4.877554e-2
GO:0046487 Glyoxylate metabolic process 4.877554e-2
GO:0031388 Organic acid phosphorylation 4.877554e-2
Module 4Genes 13
GO termDescriptionq-value
GO:0010124 Phenylacetate catabolic process 1.007414e-30
GO:0006631 Fatty acid metabolic process 4.750876e-3
Module 5Genes 11
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 1.266090e-5
GO:0005975 Carbohydrate metabolic process 6.121094e-4
GO:2001059 D-tagatose 6-phosphate catabolic process 1.608170e-3
Module 6Genes 11
GO termDescriptionq-value
GO:0009437 Carnitine metabolic process 4.021852e-18
GO:0042413 Carnitine catabolic process 3.391214e-4
GO:0055114 Oxidation-reduction process 5.974945e-3
Module 7Genes 11
GO termDescriptionq-value
GO:0046392 Galactarate catabolic process 1.041381e-8
GO:0042838 D-glucarate catabolic process 1.041381e-8
GO:0031388 Organic acid phosphorylation 4.075577e-2
GO:0046487 Glyoxylate metabolic process 4.075577e-2
GO:0006573 Valine metabolic process 4.075577e-2
Module 8Genes 10
GO termDescriptionq-value
GO:0006071 Glycerol metabolic process 2.003692e-9
GO:0019563 Glycerol catabolic process 2.003692e-9
GO:0006072 Glycerol-3-phosphate metabolic process 1.991212e-6
GO:0015793 Glycerol transport 7.100799e-4
GO:0009992 Cellular water homeostasis 4.075577e-2
GO:0046168 Glycerol-3-phosphate catabolic process 4.075577e-2
GO:0006833 Water transport 4.075577e-2
Module 9Genes 9
GO termDescriptionq-value
GO:0032259 Methylation 4.718157e-2
GO:0009372 Quorum sensing 4.718157e-2
Module 10Genes 8
GO termDescriptionq-value
GO:0070689 L-threonine catabolic process to propionate 3.499750e-14
GO:0006567 Threonine catabolic process 3.163579e-6
GO:0015826 Threonine transport 3.536401e-2
GO:0006566 Threonine metabolic process 3.536401e-2
GO:0045893 Positive regulation of transcription, DNA-templated 4.335678e-2
Module 11Genes 8
GO termDescriptionq-value
GO:0019854 L-ascorbic acid catabolic process 4.145592e-9
GO:0015882 L-ascorbic acid transport 1.824159e-4
GO:0019852 L-ascorbic acid metabolic process 1.824159e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 3.097639e-3
GO:0034219 Carbohydrate transmembrane transport 6.090921e-3
Module 12Genes 7
GO termDescriptionq-value
GO:0019380 3-phenylpropionate catabolic process 2.200900e-12
GO:0019622 3-(3-hydroxy)phenylpropionate catabolic process 6.425543e-7
GO:0019439 Aromatic compound catabolic process 2.276400e-6
GO:0046271 Phenylpropanoid catabolic process 1.435848e-4
Module 13Genes 7
GO termDescriptionq-value
GO:0042355 L-fucose catabolic process 2.430617e-8
GO:0019571 D-arabinose catabolic process 6.425543e-7
GO:0006004 Fucose metabolic process 1.435848e-4
GO:0015756 Fucose transport 3.340405e-2
GO:0051143 Propanediol metabolic process 3.340405e-2
GO:0015751 Arabinose transport 4.176323e-2
Module 14Genes 7
GO termDescriptionq-value
GO:0009271 Phage shock 4.013296e-7
GO:0006355 Regulation of transcription, DNA-templated 2.280036e-2
Module 15Genes 6
GO termDescriptionq-value
GO:0035444 Nickel cation transmembrane transport 5.692974e-4
GO:0010045 Response to nickel cation 3.493772e-2
Module 16Genes 6
GO termDescriptionq-value
GO:0015074 DNA integration 3.449538e-3
GO:0007049 Cell cycle 7.837348e-3
GO:0006310 DNA recombination 8.389660e-3
GO:0051301 Cell division 1.425386e-2
GO:0075713 Establishment of integrated proviral latency 3.536401e-2
GO:0051302 Regulation of cell division 4.075577e-2
GO:0032196 Transposition 4.552101e-2
Module 17Genes 6
GO termDescriptionq-value
GO:0019301 Rhamnose catabolic process 3.059925e-6
GO:0019299 Rhamnose metabolic process 1.090381e-4
GO:0045893 Positive regulation of transcription, DNA-templated 3.002266e-2
Module 18Genes 6
GO termDescriptionq-value
GO:0009102 Biotin biosynthetic process 3.499750e-14
Module 19Genes 6
GO termDescriptionq-value
GO:0019380 3-phenylpropionate catabolic process 5.181970e-10
Module 20Genes 6
GO termDescriptionq-value
GO:0019316 D-allose catabolic process 1.916665e-4
GO:0008643 Carbohydrate transport 4.295093e-3
GO:0044262 Cellular carbohydrate metabolic process 4.075577e-2
Module 21Genes 6
GO termDescriptionq-value
GO:0046688 Response to copper ion 3.849725e-13
GO:0010272 Response to silver ion 1.198415e-9
GO:0006878 Cellular copper ion homeostasis 4.145592e-9
GO:0010273 Detoxification of copper ion 4.145592e-9
GO:0060003 Copper ion export 4.013296e-7
GO:0015679 Plasma membrane copper ion transport 1.090381e-4
GO:0010628 Positive regulation of gene expression 5.300317e-4
GO:0010043 Response to zinc ion 3.811759e-2
GO:0000160 Phosphorelay signal transduction system 4.245800e-2
Module 22Genes 5
GO termDescriptionq-value
GO:0071229 Cellular response to acid chemical 4.817961e-5
GO:0042542 Response to hydrogen peroxide 2.944544e-2
Module 23Genes 5
GO termDescriptionq-value
GO:0071805 Potassium ion transmembrane transport 4.145592e-9
GO:0006813 Potassium ion transport 9.757912e-6
GO:0001121 Transcription from bacterial-type RNA polymerase promoter 2.641337e-2
Module 24Genes 5
GO termDescriptionq-value
GO:0042884 Microcin transport 2.287883e-9
GO:0006200 Obsolete ATP catabolic process 1.294825e-2
GO:0055085 Transmembrane transport 2.188056e-2
Module 25Genes 5
GO termDescriptionq-value
GO:0034628 'de novo' NAD biosynthetic process from aspartate 3.660660e-4
GO:0009435 NAD biosynthetic process 5.692974e-4
Module 26Genes 5
GO termDescriptionq-value
GO:0009242 Colanic acid biosynthetic process 4.176323e-2
Module 27Genes 5
GO termDescriptionq-value
GO:0046459 Short-chain fatty acid metabolic process 7.588730e-5
Module 28Genes 4
GO termDescriptionq-value
GO:0015767 Lactose transport 2.944544e-2
Module 29Genes 4
GO termDescriptionq-value
GO:0006307 DNA dealkylation involved in DNA repair 3.366201e-7
GO:0080111 DNA demethylation 4.817961e-5
GO:0006281 DNA repair 1.130380e-2
GO:0042245 RNA repair 2.944544e-2
GO:0006284 Base-excision repair 4.075577e-2
Module 30Genes 4
GO termDescriptionq-value
GO:0009440 Cyanate catabolic process 9.587317e-8
Module 31Genes 4
GO termDescriptionq-value
GO:0034198 Cellular response to amino acid starvation 1.870782e-2
GO:0006355 Regulation of transcription, DNA-templated 2.280036e-2
GO:0017148 Negative regulation of translation 3.536401e-2
GO:0006402 MRNA catabolic process 4.293261e-2
Module 32Genes 4
GO termDescriptionq-value
GO:0019285 Glycine betaine biosynthetic process from choline 1.027213e-10
GO:0006970 Response to osmotic stress 2.406189e-5
Module 33Genes 4
GO termDescriptionq-value
GO:0019563 Glycerol catabolic process 3.163579e-6
Module 35Genes 3
GO termDescriptionq-value
GO:0055086 Nucleobase-containing small molecule metabolic process 2.496052e-5
GO:0034355 NAD salvage 1.870782e-2
GO:0006152 Purine nucleoside catabolic process 1.870782e-2
GO:0015858 Nucleoside transport 2.494383e-2
GO:1901642 Nucleoside transmembrane transport 2.494383e-2
Module 36Genes 3
GO termDescriptionq-value
GO:0008156 Negative regulation of DNA replication 1.870782e-2
GO:0042594 Response to starvation 2.494383e-2
GO:0043488 Regulation of mRNA stability 2.944544e-2
GO:0009372 Quorum sensing 3.493772e-2
GO:0006355 Regulation of transcription, DNA-templated 4.335678e-2
GO:0017148 Negative regulation of translation 4.552101e-2
Module 37Genes 3
GO termDescriptionq-value
GO:0006396 RNA processing 6.002991e-4
GO:0006266 DNA ligation 1.870782e-2
GO:0042245 RNA repair 2.494383e-2
Module 38Genes 3
GO termDescriptionq-value
GO:0019853 L-ascorbic acid biosynthetic process 1.870782e-2
GO:0051143 Propanediol metabolic process 1.870782e-2
GO:0000302 Response to reactive oxygen species 1.870782e-2
GO:0051596 Methylglyoxal catabolic process 2.944544e-2
Module 39Genes 3
GO termDescriptionq-value
GO:0046323 Glucose import 1.870782e-2
GO:0043433 Negative regulation of sequence-specific DNA binding transcription factor activity 2.944544e-2
GO:0015768 Maltose transport 3.493772e-2
Module 40Genes 3
GO termDescriptionq-value
GO:0042942 D-serine transport 1.870782e-2
Module 41Genes 3
GO termDescriptionq-value
GO:0035725 Sodium ion transmembrane transport 1.870782e-2
Module 42Genes 3
GO termDescriptionq-value
GO:0035873 Lactate transmembrane transport 1.870782e-2
GO:0097339 Glycolate transmembrane transport 2.494383e-2
GO:0019516 Lactate oxidation 2.494383e-2
GO:0042355 L-fucose catabolic process 3.811759e-2
Module 43Genes 3
GO termDescriptionq-value
GO:0000160 Phosphorelay signal transduction system 6.982051e-3
Module 44Genes 3
GO termDescriptionq-value
GO:0045947 Negative regulation of translational initiation 1.727875e-2
GO:0006402 MRNA catabolic process 2.859931e-2
Module 45Genes 3
GO termDescriptionq-value
GO:0046685 Response to arsenic-containing substance 9.587317e-8
GO:0015700 Arsenite transport 1.870782e-2
Module 49Genes 3
GO termDescriptionq-value
GO:0097173 N-acetylmuramic acid catabolic process 2.496052e-5
GO:0005975 Carbohydrate metabolic process 1.100274e-2
GO:0043470 Regulation of carbohydrate catabolic process 1.870782e-2
GO:0097175 1,6-anhydro-N-acetyl-beta-muramic acid catabolic process 1.870782e-2
GO:0046348 Amino sugar catabolic process 1.870782e-2
Module 50Genes 3
GO termDescriptionq-value
GO:0009267 Cellular response to starvation 2.944544e-2
GO:0043488 Regulation of mRNA stability 2.944544e-2
GO:0030308 Negative regulation of cell growth 3.493772e-2
GO:0009372 Quorum sensing 3.493772e-2
GO:0006355 Regulation of transcription, DNA-templated 4.335678e-2
Module 51Genes 2
GO termDescriptionq-value
GO:0006184 Obsolete GTP catabolic process 2.859931e-2
Module 52Genes 2
GO termDescriptionq-value
GO:0008219 Cell death 8.776507e-3
Module 54Genes 2
GO termDescriptionq-value
GO:0046686 Response to cadmium ion 1.461462e-2
GO:0070574 Cadmium ion transmembrane transport 1.870782e-2
GO:0006824 Cobalt ion transport 2.280036e-2
GO:0071577 Zinc ion transmembrane transport 2.280036e-2
GO:0006829 Zinc ion transport 2.641337e-2
GO:0035444 Nickel cation transmembrane transport 2.641337e-2
Module 55Genes 2
GO termDescriptionq-value
GO:0010628 Positive regulation of gene expression 2.280036e-2
GO:0009372 Quorum sensing 2.641337e-2
Module 57Genes 2
GO termDescriptionq-value
GO:0006268 DNA unwinding involved in DNA replication 2.280036e-2
GO:0006265 DNA topological change 2.280036e-2
GO:0060567 Negative regulation of DNA-templated transcription, termination 2.280036e-2
GO:0009409 Response to cold 3.536401e-2
GO:0031564 Transcription antitermination 4.075577e-2
GO:0007059 Chromosome segregation 4.293261e-2
Module 58Genes 2
GO termDescriptionq-value
GO:0033212 Iron assimilation 2.280036e-2
Module 59Genes 2
GO termDescriptionq-value
GO:0006355 Regulation of transcription, DNA-templated 2.280036e-2
Module 60Genes 2
GO termDescriptionq-value
GO:0046688 Response to copper ion 3.391214e-4
Module 62Genes 2
GO termDescriptionq-value
GO:0012501 Programmed cell death 1.461462e-2
Module 63Genes 2
GO termDescriptionq-value
GO:0012501 Programmed cell death 1.461462e-2
Module 65Genes 2
GO termDescriptionq-value
GO:0012501 Programmed cell death 1.461462e-2
Module 67Genes 2
GO termDescriptionq-value
GO:0031669 Cellular response to nutrient levels 1.461462e-2
GO:0009267 Cellular response to starvation 2.280036e-2
Module 68Genes 2
GO termDescriptionq-value
GO:0044010 Single-species biofilm formation 8.495556e-4
GO:0045947 Negative regulation of translational initiation 2.641337e-2
GO:0006402 MRNA catabolic process 4.293261e-2
Module 69Genes 2
GO termDescriptionq-value
GO:0012501 Programmed cell death 1.461462e-2
Module 71Genes 2
GO termDescriptionq-value
GO:0008219 Cell death 8.776507e-3
Module 73Genes 2
GO termDescriptionq-value
GO:0022611 Dormancy process 2.280036e-2
GO:0043086 Negative regulation of catalytic activity 3.536401e-2
Module 74Genes 2
GO termDescriptionq-value
GO:0009405 Pathogenesis 2.496052e-5
Module 75Genes 2
GO termDescriptionq-value
GO:0006559 L-phenylalanine catabolic process 1.461462e-2
GO:0009435 NAD biosynthetic process 2.641337e-2
Not annotated modules
Module Genes
1.2 4
1.7 3
1.20 1
1.26 1
1.27 1
1.29 1
1.34 1
1.41 1
1.48 1
1.49 1
1.54 3
1.55 1
1.56 1
1.59 1
1.60 2
1.62 1
1.63 1
1.64 2
1.65 1
34 4
46 3
47 3
48 3
53 2
56 2
61 2
64 2
66 2
70 2
72 2