Escherichia coli str. K-12 substr. MG1655 (All evidences)

Annotated modules (89%)
Module 1.1Genes 306
GO termDescriptionq-value
GO:0019521 D-gluconate metabolic process 3.407951e-12
GO:0046183 L-idonate catabolic process 9.644757e-9
GO:0046177 D-gluconate catabolic process 4.032215e-8
GO:0019740 Nitrogen utilization 4.084435e-6
GO:0006212 Uracil catabolic process 4.084435e-6
GO:0051607 Defense response to virus 2.290142e-5
GO:0051454 Intracellular pH elevation 2.124021e-4
GO:0006790 Sulfur compound metabolic process 4.640333e-4
GO:0070814 Hydrogen sulfide biosynthetic process 9.016049e-4
GO:0000103 Sulfate assimilation 9.016049e-4
GO:0006208 Pyrimidine nucleobase catabolic process 1.069413e-3
GO:0000160 Phosphorelay signal transduction system 1.132066e-3
GO:0045226 Extracellular polysaccharide biosynthetic process 5.668639e-3
GO:0009098 Leucine biosynthetic process 5.668639e-3
GO:0071973 Bacterial-type flagellum-dependent cell motility 6.634074e-3
GO:0046777 Protein autophosphorylation 6.825670e-3
GO:0033554 Cellular response to stress 1.050445e-2
GO:0006855 Drug transmembrane transport 1.050445e-2
GO:0009399 Nitrogen fixation 1.050445e-2
GO:0042918 Alkanesulfonate transport 1.050445e-2
GO:0006569 Tryptophan catabolic process 1.050445e-2
GO:0022610 Biological adhesion 1.050445e-2
GO:0006535 Cysteine biosynthetic process from serine 1.050445e-2
GO:0006351 Transcription, DNA-templated 1.050445e-2
GO:0009268 Response to pH 1.050445e-2
GO:0046677 Response to antibiotic 1.534887e-2
GO:0015847 Putrescine transport 2.289396e-2
GO:0015031 Protein transport 2.459777e-2
GO:0046618 Drug export 2.728468e-2
GO:2000144 Positive regulation of DNA-templated transcription, initiation 2.728468e-2
GO:0006865 Amino acid transport 2.990793e-2
GO:0045893 Positive regulation of transcription, DNA-templated 3.619657e-2
GO:0006935 Chemotaxis 3.805144e-2
GO:0018106 Peptidyl-histidine phosphorylation 3.981230e-2
GO:0005978 Glycogen biosynthetic process 4.479832e-2
GO:0019344 Cysteine biosynthetic process 4.479832e-2
GO:0006536 Glutamate metabolic process 4.761221e-2
GO:0070981 L-asparagine biosynthetic process 4.761221e-2
GO:0043571 Maintenance of CRISPR repeat elements 4.761221e-2
GO:0006529 Asparagine biosynthetic process 4.761221e-2
GO:0051649 Establishment of localization in cell 4.761221e-2
GO:1990000 Amyloid fibril formation 4.761221e-2
GO:0015734 Taurine transport 4.761221e-2
GO:0044010 Single-species biofilm formation 4.761221e-2
GO:0010350 Cellular response to magnesium starvation 4.761221e-2
GO:0043200 Response to amino acid 4.761221e-2
GO:0046306 Alkanesulfonate catabolic process 4.761221e-2
GO:1902021 Regulation of bacterial-type flagellum-dependent cell motility 4.761221e-2
Module 1.2Genes 47
GO termDescriptionq-value
GO:0019700 Organic phosphonate catabolic process 9.885364e-13
GO:0006817 Phosphate ion transport 4.782503e-11
GO:0042916 Alkylphosphonate transport 2.880409e-6
GO:0001407 Glycerophosphodiester transport 2.880409e-6
GO:0015794 Glycerol-3-phosphate transport 1.111536e-5
GO:0016036 Cellular response to phosphate starvation 6.093637e-5
GO:0015716 Organic phosphonate transport 9.952431e-5
GO:0045454 Cell redox homeostasis 3.798457e-4
GO:0009089 Lysine biosynthetic process via diaminopimelate 7.909083e-3
GO:0019877 Diaminopimelate biosynthetic process 1.533019e-2
GO:0006979 Response to oxidative stress 3.258981e-2
GO:0051409 Response to nitrosative stress 3.732801e-2
GO:0042744 Hydrogen peroxide catabolic process 3.732801e-2
GO:0001121 Transcription from bacterial-type RNA polymerase promoter 3.732801e-2
GO:0006260 DNA replication 4.345840e-2
GO:0042542 Response to hydrogen peroxide 4.761221e-2
GO:0006662 Glycerol ether metabolic process 4.761221e-2
GO:2000142 Regulation of DNA-templated transcription, initiation 4.761221e-2
Module 1.3Genes 23
GO termDescriptionq-value
GO:0006526 Arginine biosynthetic process 2.481187e-13
GO:0006048 UDP-N-acetylglucosamine biosynthetic process 9.091691e-6
GO:1902815 N,N'-diacetylchitobiose import 9.091691e-6
GO:0000050 Urea cycle 1.908876e-4
GO:0005975 Carbohydrate metabolic process 2.703870e-4
GO:0052777 Diacetylchitobiose catabolic process 7.187522e-4
GO:1902765 L-arginine import into cell 9.281102e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 2.244331e-3
GO:0044238 Primary metabolic process 4.675956e-3
GO:0006865 Amino acid transport 1.288725e-2
GO:0034219 Carbohydrate transmembrane transport 2.080166e-2
GO:0055072 Iron ion homeostasis 4.791902e-2
Module 1.4Genes 22
GO termDescriptionq-value
GO:0006113 Fermentation 2.017938e-9
GO:0009061 Anaerobic respiration 1.212880e-4
GO:0051191 Prosthetic group biosynthetic process 8.566258e-4
GO:0006084 Acetyl-CoA metabolic process 8.566258e-4
GO:0009605 Response to external stimulus 8.566258e-4
GO:0044780 Bacterial-type flagellum assembly 2.031974e-3
GO:0006119 Oxidative phosphorylation 6.582038e-3
GO:0006099 Tricarboxylic acid cycle 9.717989e-3
GO:0016036 Cellular response to phosphate starvation 1.198867e-2
GO:0071973 Bacterial-type flagellum-dependent cell motility 1.473951e-2
GO:0019646 Aerobic electron transport chain 1.867116e-2
GO:0042493 Response to drug 3.916292e-2
Module 1.5Genes 6
GO termDescriptionq-value
GO:0019698 D-galacturonate catabolic process 1.276942e-6
GO:0042840 D-glucuronate catabolic process 4.479832e-2
Module 1.6Genes 9
GO termDescriptionq-value
GO:0030980 Alpha-glucan catabolic process 5.285361e-4
GO:0042956 Maltodextrin transport 1.496215e-3
GO:0051692 Cellular oligosaccharide catabolic process 3.732801e-2
GO:0016032 Viral process 4.761221e-2
GO:0005980 Glycogen catabolic process 4.761221e-2
Module 1.7Genes 15
GO termDescriptionq-value
GO:0006635 Fatty acid beta-oxidation 2.266321e-10
GO:0006097 Glyoxylate cycle 1.303690e-6
GO:0006099 Tricarboxylic acid cycle 3.092749e-3
Module 1.8Genes 11
GO termDescriptionq-value
GO:0009086 Methionine biosynthetic process 1.971672e-8
GO:0006730 One-carbon metabolic process 1.716222e-5
GO:0046654 Tetrahydrofolate biosynthetic process 5.508018e-3
GO:0051289 Protein homotetramerization 4.249869e-2
GO:0035999 Tetrahydrofolate interconversion 4.249869e-2
GO:0051409 Response to nitrosative stress 4.249869e-2
Module 1.9Genes 41
GO termDescriptionq-value
GO:0009432 SOS response 3.039142e-44
GO:0006281 DNA repair 1.338331e-13
GO:0006974 Cellular response to DNA damage stimulus 2.033829e-11
GO:0006289 Nucleotide-excision repair 7.819323e-6
GO:0032508 DNA duplex unwinding 4.334032e-5
GO:0000725 Recombinational repair 5.444771e-4
GO:0019985 Translesion synthesis 2.980750e-3
GO:0006200 Obsolete ATP catabolic process 2.022182e-2
GO:0006261 DNA-dependent DNA replication 2.462907e-2
GO:0006298 Mismatch repair 3.548906e-2
GO:0006310 DNA recombination 4.479832e-2
Module 1.10Genes 10
GO termDescriptionq-value
GO:0019521 D-gluconate metabolic process 3.407951e-12
GO:0046183 L-idonate catabolic process 9.644757e-9
GO:0046177 D-gluconate catabolic process 4.032215e-8
GO:0019740 Nitrogen utilization 4.084435e-6
GO:0006212 Uracil catabolic process 4.084435e-6
GO:0051607 Defense response to virus 2.290142e-5
GO:0051454 Intracellular pH elevation 2.124021e-4
GO:0006790 Sulfur compound metabolic process 4.640333e-4
GO:0070814 Hydrogen sulfide biosynthetic process 9.016049e-4
GO:0000103 Sulfate assimilation 9.016049e-4
GO:0006208 Pyrimidine nucleobase catabolic process 1.069413e-3
GO:0000160 Phosphorelay signal transduction system 1.132066e-3
GO:0045226 Extracellular polysaccharide biosynthetic process 5.668639e-3
GO:0009098 Leucine biosynthetic process 5.668639e-3
GO:0071973 Bacterial-type flagellum-dependent cell motility 6.634074e-3
GO:0046777 Protein autophosphorylation 6.825670e-3
GO:0033554 Cellular response to stress 1.050445e-2
GO:0006855 Drug transmembrane transport 1.050445e-2
GO:0009399 Nitrogen fixation 1.050445e-2
GO:0042918 Alkanesulfonate transport 1.050445e-2
GO:0006569 Tryptophan catabolic process 1.050445e-2
GO:0022610 Biological adhesion 1.050445e-2
GO:0006535 Cysteine biosynthetic process from serine 1.050445e-2
GO:0006351 Transcription, DNA-templated 1.050445e-2
GO:0009268 Response to pH 1.050445e-2
GO:0046677 Response to antibiotic 1.534887e-2
GO:0015847 Putrescine transport 2.289396e-2
GO:0015031 Protein transport 2.459777e-2
GO:0046618 Drug export 2.728468e-2
GO:2000144 Positive regulation of DNA-templated transcription, initiation 2.728468e-2
GO:0006865 Amino acid transport 2.990793e-2
GO:0045893 Positive regulation of transcription, DNA-templated 3.619657e-2
GO:0006935 Chemotaxis 3.805144e-2
GO:0018106 Peptidyl-histidine phosphorylation 3.981230e-2
GO:0005978 Glycogen biosynthetic process 4.479832e-2
GO:0019344 Cysteine biosynthetic process 4.479832e-2
GO:0006536 Glutamate metabolic process 4.761221e-2
GO:0070981 L-asparagine biosynthetic process 4.761221e-2
GO:0043571 Maintenance of CRISPR repeat elements 4.761221e-2
GO:0006529 Asparagine biosynthetic process 4.761221e-2
GO:0051649 Establishment of localization in cell 4.761221e-2
GO:1990000 Amyloid fibril formation 4.761221e-2
GO:0015734 Taurine transport 4.761221e-2
GO:0044010 Single-species biofilm formation 4.761221e-2
GO:0010350 Cellular response to magnesium starvation 4.761221e-2
GO:0043200 Response to amino acid 4.761221e-2
GO:0046306 Alkanesulfonate catabolic process 4.761221e-2
GO:1902021 Regulation of bacterial-type flagellum-dependent cell motility 4.761221e-2
Module 1.11Genes 20
GO termDescriptionq-value
GO:0051604 Protein maturation 3.951888e-9
GO:0042773 ATP synthesis coupled electron transport 9.565707e-3
GO:0006464 Cellular protein modification process 1.590790e-2
Module 1.12Genes 5
GO termDescriptionq-value
GO:0008643 Carbohydrate transport 3.964132e-3
GO:0006012 Galactose metabolic process 2.648173e-2
Module 1.16Genes 6
GO termDescriptionq-value
GO:0043708 Cell adhesion involved in biofilm formation 9.834831e-4
GO:0006885 Regulation of pH 2.925908e-2
GO:0006883 Cellular sodium ion homeostasis 2.925908e-2
Module 1.17Genes 3
GO termDescriptionq-value
GO:0010273 Detoxification of copper ion 2.648173e-2
GO:0034220 Ion transmembrane transport 3.231898e-2
Module 1.18Genes 6
GO termDescriptionq-value
GO:0019262 N-acetylneuraminate catabolic process 2.864997e-6
GO:0005975 Carbohydrate metabolic process 3.045568e-2
Module 1.19Genes 1
GO termDescriptionq-value
GO:2000143 Negative regulation of DNA-templated transcription, initiation 1.105643e-2
Module 1.20Genes 11
GO termDescriptionq-value
GO:0019700 Organic phosphonate catabolic process 9.885364e-13
GO:0006817 Phosphate ion transport 4.782503e-11
GO:0042916 Alkylphosphonate transport 2.880409e-6
GO:0001407 Glycerophosphodiester transport 2.880409e-6
GO:0015794 Glycerol-3-phosphate transport 1.111536e-5
GO:0016036 Cellular response to phosphate starvation 6.093637e-5
GO:0015716 Organic phosphonate transport 9.952431e-5
GO:0045454 Cell redox homeostasis 3.798457e-4
GO:0009089 Lysine biosynthetic process via diaminopimelate 7.909083e-3
GO:0019877 Diaminopimelate biosynthetic process 1.533019e-2
GO:0006979 Response to oxidative stress 3.258981e-2
GO:0051409 Response to nitrosative stress 3.732801e-2
GO:0042744 Hydrogen peroxide catabolic process 3.732801e-2
GO:0001121 Transcription from bacterial-type RNA polymerase promoter 3.732801e-2
GO:0006260 DNA replication 4.345840e-2
GO:0042542 Response to hydrogen peroxide 4.761221e-2
GO:0006662 Glycerol ether metabolic process 4.761221e-2
GO:2000142 Regulation of DNA-templated transcription, initiation 4.761221e-2
Module 1.21Genes 18
GO termDescriptionq-value
GO:0006189 'de novo' IMP biosynthetic process 1.777838e-13
GO:0006164 Purine nucleotide biosynthetic process 1.273294e-4
GO:0009446 Putrescine biosynthetic process 7.187522e-4
GO:0009156 Ribonucleoside monophosphate biosynthetic process 7.187522e-4
GO:0008295 Spermidine biosynthetic process 5.508018e-3
GO:0044205 'de novo' UMP biosynthetic process 7.725920e-3
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.261894e-2
GO:0006541 Glutamine metabolic process 2.080166e-2
Module 1.22Genes 24
GO termDescriptionq-value
GO:0042128 Nitrate assimilation 4.084435e-6
GO:0018378 Cytochrome c-heme linkage via heme-L-cysteine 7.819323e-6
GO:0009061 Anaerobic respiration 5.517517e-5
GO:0045333 Cellular respiration 1.750984e-4
GO:0019645 Anaerobic electron transport chain 3.197483e-3
GO:0022904 Respiratory electron transport chain 9.346453e-3
Module 1.24Genes 3
GO termDescriptionq-value
GO:0006119 Oxidative phosphorylation 1.750984e-4
GO:0019646 Aerobic electron transport chain 5.285361e-4
Module 1.25Genes 13
GO termDescriptionq-value
GO:0015031 Protein transport 2.148083e-6
GO:0009061 Anaerobic respiration 3.601954e-3
GO:0042939 Tripeptide transport 3.981230e-2
GO:0071249 Cellular response to nitrate 3.981230e-2
GO:0006857 Oligopeptide transport 3.981230e-2
GO:0071250 Cellular response to nitrite 3.981230e-2
Module 1.27Genes 4
GO termDescriptionq-value
GO:0071421 Manganese ion transmembrane transport 1.396940e-2
GO:2000144 Positive regulation of DNA-templated transcription, initiation 2.289396e-2
Module 1.28Genes 3
GO termDescriptionq-value
GO:0044206 UMP salvage 1.867116e-2
GO:0009166 Nucleotide catabolic process 2.462907e-2
Module 1.29Genes 3
GO termDescriptionq-value
GO:0015949 Nucleobase-containing small molecule interconversion 1.496215e-3
Module 1.30Genes 22
GO termDescriptionq-value
GO:0006526 Arginine biosynthetic process 2.481187e-13
GO:0006048 UDP-N-acetylglucosamine biosynthetic process 9.091691e-6
GO:1902815 N,N'-diacetylchitobiose import 9.091691e-6
GO:0000050 Urea cycle 1.908876e-4
GO:0005975 Carbohydrate metabolic process 2.703870e-4
GO:0052777 Diacetylchitobiose catabolic process 7.187522e-4
GO:1902765 L-arginine import into cell 9.281102e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 2.244331e-3
GO:0044238 Primary metabolic process 4.675956e-3
GO:0006865 Amino acid transport 1.288725e-2
GO:0034219 Carbohydrate transmembrane transport 2.080166e-2
GO:0055072 Iron ion homeostasis 4.791902e-2
Module 1.31Genes 3
GO termDescriptionq-value
GO:0046677 Response to antibiotic 1.603099e-4
GO:0009636 Response to toxic substance 3.364067e-2
Module 1.32Genes 9
GO termDescriptionq-value
GO:0006096 Glycolytic process 4.176591e-4
GO:0006090 Pyruvate metabolic process 7.811051e-4
GO:0055114 Oxidation-reduction process 2.128876e-3
GO:0009107 Lipoate biosynthetic process 3.472054e-2
GO:0009249 Protein lipoylation 4.479832e-2
Module 1.33Genes 8
GO termDescriptionq-value
GO:0000162 Tryptophan biosynthetic process 3.526312e-14
GO:0009073 Aromatic amino acid family biosynthetic process 7.574510e-5
Module 1.34Genes 1
GO termDescriptionq-value
GO:0009266 Response to temperature stimulus 1.867116e-2
Module 1.35Genes 1
GO termDescriptionq-value
GO:0042493 Response to drug 3.916292e-2
Module 1.36Genes 1
GO termDescriptionq-value
GO:0006352 DNA-templated transcription, initiation 2.120544e-2
GO:0055072 Iron ion homeostasis 4.249869e-2
GO:0006811 Ion transport 4.868032e-2
Module 1.37Genes 6
GO termDescriptionq-value
GO:0006829 Zinc ion transport 5.038214e-4
GO:0006412 Translation 2.120544e-2
GO:0034224 Cellular response to zinc ion starvation 2.648173e-2
Module 1.38Genes 6
GO termDescriptionq-value
GO:0009165 Nucleotide biosynthetic process 2.925908e-2
GO:0006571 Tyrosine biosynthetic process 2.925908e-2
GO:0009257 10-formyltetrahydrofolate biosynthetic process 2.925908e-2
GO:0033585 L-phenylalanine biosynthetic process from chorismate via phenylpyruvate 2.925908e-2
GO:0015828 Tyrosine transport 2.925908e-2
GO:0006532 Aspartate biosynthetic process 2.925908e-2
GO:0046417 Chorismate metabolic process 2.925908e-2
GO:0015827 Tryptophan transport 3.732801e-2
GO:0071806 Protein transmembrane transport 3.732801e-2
GO:0009094 L-phenylalanine biosynthetic process 3.732801e-2
GO:0015823 Phenylalanine transport 3.732801e-2
GO:0019439 Aromatic compound catabolic process 4.479832e-2
Module 1.40Genes 1
GO termDescriptionq-value
GO:0006113 Fermentation 2.017938e-9
GO:0009061 Anaerobic respiration 1.212880e-4
GO:0051191 Prosthetic group biosynthetic process 8.566258e-4
GO:0006084 Acetyl-CoA metabolic process 8.566258e-4
GO:0009605 Response to external stimulus 8.566258e-4
GO:0044780 Bacterial-type flagellum assembly 2.031974e-3
GO:0006119 Oxidative phosphorylation 6.582038e-3
GO:0006099 Tricarboxylic acid cycle 9.717989e-3
GO:0016036 Cellular response to phosphate starvation 1.198867e-2
GO:0071973 Bacterial-type flagellum-dependent cell motility 1.473951e-2
GO:0019646 Aerobic electron transport chain 1.867116e-2
GO:0042493 Response to drug 3.916292e-2
Module 1.41Genes 1
GO termDescriptionq-value
GO:0045717 Negative regulation of fatty acid biosynthetic process 8.037669e-3
GO:0006633 Fatty acid biosynthetic process 2.925908e-2
Module 1.42Genes 1
GO termDescriptionq-value
GO:0043171 Peptide catabolic process 8.037669e-3
GO:0042150 Plasmid recombination 1.105643e-2
GO:0006276 Plasmid maintenance 2.120544e-2
GO:0031564 Transcription antitermination 2.648173e-2
GO:0006310 DNA recombination 4.868032e-2
Module 1.44Genes 3
GO termDescriptionq-value
GO:0032297 Negative regulation of DNA-dependent DNA replication initiation 1.867116e-2
GO:0030261 Chromosome condensation 3.364067e-2
GO:0005978 Glycogen biosynthetic process 3.364067e-2
GO:0006006 Glucose metabolic process 4.761221e-2
Module 1.45Genes 7
GO termDescriptionq-value
GO:0016226 Iron-sulfur cluster assembly 9.879259e-7
GO:0006534 Cysteine metabolic process 2.925908e-2
GO:0031119 TRNA pseudouridine synthesis 3.732801e-2
Module 1.46Genes 1
GO termDescriptionq-value
GO:0010628 Positive regulation of gene expression 1.396940e-2
GO:0009089 Lysine biosynthetic process via diaminopimelate 2.865547e-2
Module 2Genes 15
GO termDescriptionq-value
GO:0019569 L-arabinose catabolic process to xylulose 5-phosphate 5.504039e-6
GO:0019568 Arabinose catabolic process 5.504039e-6
GO:0015752 D-ribose transport 5.504039e-6
GO:0042882 L-arabinose transport 5.504039e-6
GO:0015753 D-xylose transport 1.872318e-5
GO:0042843 D-xylose catabolic process 5.224916e-4
GO:0046835 Carbohydrate phosphorylation 2.925908e-2
Module 3Genes 13
GO termDescriptionq-value
GO:0006144 Purine nucleobase metabolic process 1.152582e-9
GO:0009442 Allantoin assimilation pathway 2.908517e-8
GO:0009436 Glyoxylate catabolic process 1.207071e-5
GO:0046296 Glycolate catabolic process 5.104131e-5
GO:0006573 Valine metabolic process 4.761221e-2
GO:0046487 Glyoxylate metabolic process 4.761221e-2
GO:0031388 Organic acid phosphorylation 4.761221e-2
Module 4Genes 13
GO termDescriptionq-value
GO:0010124 Phenylacetate catabolic process 1.079634e-30
GO:0006631 Fatty acid metabolic process 4.361434e-3
Module 5Genes 11
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 1.207071e-5
GO:0005975 Carbohydrate metabolic process 5.444771e-4
GO:2001059 D-tagatose 6-phosphate catabolic process 1.387229e-3
Module 6Genes 11
GO termDescriptionq-value
GO:0009437 Carnitine metabolic process 4.124341e-18
GO:0042413 Carnitine catabolic process 3.053523e-4
GO:0055114 Oxidation-reduction process 5.472824e-3
Module 7Genes 10
GO termDescriptionq-value
GO:0019324 L-lyxose metabolic process 6.657749e-6
GO:0034219 Carbohydrate transmembrane transport 7.574510e-5
GO:0019572 L-arabinose catabolic process 3.472054e-2
GO:0019323 Pentose catabolic process 3.472054e-2
Module 8Genes 10
GO termDescriptionq-value
GO:0019629 Propionate catabolic process, 2-methylcitrate cycle 4.032215e-8
GO:0019679 Propionate metabolic process, methylcitrate cycle 2.540326e-4
Module 9Genes 10
GO termDescriptionq-value
GO:0046392 Galactarate catabolic process 5.979749e-9
GO:0042838 D-glucarate catabolic process 5.979749e-9
GO:0031388 Organic acid phosphorylation 3.732801e-2
GO:0046487 Glyoxylate metabolic process 3.732801e-2
GO:0006573 Valine metabolic process 3.732801e-2
Module 10Genes 10
GO termDescriptionq-value
GO:0006071 Glycerol metabolic process 1.910166e-9
GO:0019563 Glycerol catabolic process 1.910166e-9
GO:0006072 Glycerol-3-phosphate metabolic process 1.847509e-6
GO:0015793 Glycerol transport 6.463314e-4
GO:0009992 Cellular water homeostasis 3.981230e-2
GO:0046168 Glycerol-3-phosphate catabolic process 3.981230e-2
GO:0006833 Water transport 3.981230e-2
Module 11Genes 9
GO termDescriptionq-value
GO:0015888 Thiamine transport 6.048394e-7
GO:0019272 L-alanine biosynthetic process from pyruvate 3.231898e-2
GO:0006523 Alanine biosynthetic process 3.231898e-2
GO:0015758 Glucose transport 4.116073e-2
GO:0015767 Lactose transport 4.116073e-2
GO:0030632 D-alanine biosynthetic process 4.116073e-2
Module 12Genes 9
GO termDescriptionq-value
GO:0032259 Methylation 4.634095e-2
GO:0009372 Quorum sensing 4.634095e-2
Module 13Genes 8
GO termDescriptionq-value
GO:0070689 L-threonine catabolic process to propionate 3.526312e-14
GO:0006567 Threonine catabolic process 3.006010e-6
GO:0015826 Threonine transport 3.472054e-2
GO:0006566 Threonine metabolic process 3.472054e-2
GO:0045893 Positive regulation of transcription, DNA-templated 4.324466e-2
Module 14Genes 8
GO termDescriptionq-value
GO:0019854 L-ascorbic acid catabolic process 3.951888e-9
GO:0015882 L-ascorbic acid transport 1.679437e-4
GO:0019852 L-ascorbic acid metabolic process 1.679437e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 2.867210e-3
GO:0034219 Carbohydrate transmembrane transport 5.508018e-3
Module 15Genes 7
GO termDescriptionq-value
GO:0019404 Galactitol catabolic process 3.681631e-7
GO:0015796 Galactitol transport 3.681631e-7
GO:0019402 Galactitol metabolic process 1.276942e-6
GO:2001059 D-tagatose 6-phosphate catabolic process 4.640333e-4
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 1.116184e-3
Module 16Genes 7
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 9.185895e-7
GO:0019294 Keto-3-deoxy-D-manno-octulosonic acid biosynthetic process 4.868032e-2
Module 17Genes 7
GO termDescriptionq-value
GO:0019380 3-phenylpropionate catabolic process 2.032772e-12
GO:0019622 3-(3-hydroxy)phenylpropionate catabolic process 6.048394e-7
GO:0019439 Aromatic compound catabolic process 2.114268e-6
GO:0046271 Phenylpropanoid catabolic process 1.294245e-4
Module 18Genes 7
GO termDescriptionq-value
GO:0042355 L-fucose catabolic process 2.194001e-8
GO:0019571 D-arabinose catabolic process 6.048394e-7
GO:0006004 Fucose metabolic process 1.294245e-4
GO:0015756 Fucose transport 3.231898e-2
GO:0051143 Propanediol metabolic process 3.231898e-2
GO:0015751 Arabinose transport 4.116073e-2
Module 19Genes 7
GO termDescriptionq-value
GO:0009271 Phage shock 3.681631e-7
GO:0006355 Regulation of transcription, DNA-templated 2.289396e-2
Module 20Genes 6
GO termDescriptionq-value
GO:0035444 Nickel cation transmembrane transport 5.038214e-4
GO:0010045 Response to nickel cation 3.364067e-2
Module 21Genes 6
GO termDescriptionq-value
GO:0015074 DNA integration 3.197483e-3
GO:0007049 Cell cycle 7.190817e-3
GO:0006310 DNA recombination 7.699902e-3
GO:0051301 Cell division 1.305872e-2
GO:0075713 Establishment of integrated proviral latency 3.472054e-2
GO:0051302 Regulation of cell division 3.981230e-2
GO:0032196 Transposition 4.479832e-2
Module 22Genes 6
GO termDescriptionq-value
GO:0019301 Rhamnose catabolic process 2.864997e-6
GO:0019299 Rhamnose metabolic process 9.689062e-5
GO:0045893 Positive regulation of transcription, DNA-templated 2.957002e-2
Module 23Genes 6
GO termDescriptionq-value
GO:0009102 Biotin biosynthetic process 3.526312e-14
Module 24Genes 6
GO termDescriptionq-value
GO:0019380 3-phenylpropionate catabolic process 4.600426e-10
Module 25Genes 6
GO termDescriptionq-value
GO:0019303 D-ribose catabolic process 6.717750e-5
GO:0008643 Carbohydrate transport 3.964132e-3
Module 26Genes 6
GO termDescriptionq-value
GO:0019316 D-allose catabolic process 1.750984e-4
GO:0008643 Carbohydrate transport 3.964132e-3
GO:0044262 Cellular carbohydrate metabolic process 3.981230e-2
Module 27Genes 6
GO termDescriptionq-value
GO:0046688 Response to copper ion 1.777838e-13
GO:0010272 Response to silver ion 1.124013e-9
GO:0006878 Cellular copper ion homeostasis 3.951888e-9
GO:0010273 Detoxification of copper ion 3.951888e-9
GO:0060003 Copper ion export 3.681631e-7
GO:0015679 Plasma membrane copper ion transport 9.689062e-5
GO:0010628 Positive regulation of gene expression 4.640333e-4
GO:0010043 Response to zinc ion 3.732801e-2
GO:0000160 Phosphorelay signal transduction system 4.116073e-2
Module 28Genes 5
GO termDescriptionq-value
GO:0071229 Cellular response to acid chemical 4.334032e-5
GO:0042542 Response to hydrogen peroxide 2.925908e-2
Module 29Genes 5
GO termDescriptionq-value
GO:0071805 Potassium ion transmembrane transport 3.951888e-9
GO:0006813 Potassium ion transport 9.202630e-6
GO:0001121 Transcription from bacterial-type RNA polymerase promoter 2.648173e-2
Module 30Genes 5
GO termDescriptionq-value
GO:0034628 'de novo' NAD biosynthetic process from aspartate 3.298260e-4
GO:0009435 NAD biosynthetic process 5.038214e-4
Module 31Genes 5
GO termDescriptionq-value
GO:0009242 Colanic acid biosynthetic process 4.116073e-2
Module 32Genes 5
GO termDescriptionq-value
GO:0046459 Short-chain fatty acid metabolic process 6.717750e-5
Module 33Genes 4
GO termDescriptionq-value
GO:0015767 Lactose transport 2.925908e-2
Module 34Genes 4
GO termDescriptionq-value
GO:0006307 DNA dealkylation involved in DNA repair 3.224793e-7
GO:0080111 DNA demethylation 4.334032e-5
GO:0006281 DNA repair 1.050445e-2
GO:0042245 RNA repair 2.925908e-2
GO:0006284 Base-excision repair 3.981230e-2
Module 35Genes 4
GO termDescriptionq-value
GO:0009440 Cyanate catabolic process 8.684874e-8
Module 36Genes 4
GO termDescriptionq-value
GO:0034198 Cellular response to amino acid starvation 1.867116e-2
GO:0006355 Regulation of transcription, DNA-templated 2.289396e-2
GO:0017148 Negative regulation of translation 3.472054e-2
GO:0006402 MRNA catabolic process 4.249869e-2
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic 4.868032e-2
Module 37Genes 4
GO termDescriptionq-value
GO:0019285 Glycine betaine biosynthetic process from choline 8.898436e-11
GO:0006970 Response to osmotic stress 2.275907e-5
Module 38Genes 4
GO termDescriptionq-value
GO:0019563 Glycerol catabolic process 3.006010e-6
Module 40Genes 3
GO termDescriptionq-value
GO:0055086 Nucleobase-containing small molecule metabolic process 2.290142e-5
GO:0034355 NAD salvage 1.867116e-2
GO:0006152 Purine nucleoside catabolic process 1.867116e-2
GO:0015858 Nucleoside transport 2.462907e-2
GO:1901642 Nucleoside transmembrane transport 2.462907e-2
Module 41Genes 3
GO termDescriptionq-value
GO:0008156 Negative regulation of DNA replication 1.867116e-2
GO:0042594 Response to starvation 2.462907e-2
GO:0043488 Regulation of mRNA stability 2.925908e-2
GO:0009372 Quorum sensing 3.364067e-2
GO:0006355 Regulation of transcription, DNA-templated 4.324466e-2
GO:0017148 Negative regulation of translation 4.479832e-2
Module 42Genes 3
GO termDescriptionq-value
GO:0006396 RNA processing 4.435768e-4
GO:0006266 DNA ligation 1.867116e-2
GO:0042245 RNA repair 2.462907e-2
Module 43Genes 3
GO termDescriptionq-value
GO:0019853 L-ascorbic acid biosynthetic process 1.867116e-2
GO:0051143 Propanediol metabolic process 1.867116e-2
GO:0000302 Response to reactive oxygen species 1.867116e-2
GO:0051596 Methylglyoxal catabolic process 2.925908e-2
Module 44Genes 3
GO termDescriptionq-value
GO:0046323 Glucose import 1.867116e-2
GO:0043433 Negative regulation of sequence-specific DNA binding transcription factor activity 2.925908e-2
GO:0015768 Maltose transport 3.364067e-2
Module 45Genes 3
GO termDescriptionq-value
GO:0006974 Cellular response to DNA damage stimulus 4.868032e-2
Module 46Genes 3
GO termDescriptionq-value
GO:0035725 Sodium ion transmembrane transport 1.867116e-2
Module 47Genes 3
GO termDescriptionq-value
GO:0035873 Lactate transmembrane transport 1.867116e-2
GO:0019516 Lactate oxidation 2.462907e-2
GO:0097339 Glycolate transmembrane transport 2.462907e-2
GO:0042355 L-fucose catabolic process 3.732801e-2
GO:0006974 Cellular response to DNA damage stimulus 4.868032e-2
Module 48Genes 3
GO termDescriptionq-value
GO:0000160 Phosphorelay signal transduction system 6.258114e-3
Module 49Genes 3
GO termDescriptionq-value
GO:0032025 Response to cobalt ion 2.290142e-5
GO:0010045 Response to nickel cation 6.167634e-5
GO:0006824 Cobalt ion transport 2.925908e-2
GO:0035444 Nickel cation transmembrane transport 3.364067e-2
Module 50Genes 3
GO termDescriptionq-value
GO:0046685 Response to arsenic-containing substance 8.684874e-8
GO:0015700 Arsenite transport 1.867116e-2
Module 54Genes 3
GO termDescriptionq-value
GO:0097173 N-acetylmuramic acid catabolic process 2.290142e-5
GO:0005975 Carbohydrate metabolic process 1.049320e-2
GO:0043470 Regulation of carbohydrate catabolic process 1.867116e-2
GO:0097175 1,6-anhydro-N-acetyl-beta-muramic acid catabolic process 1.867116e-2
GO:0046348 Amino sugar catabolic process 1.867116e-2
Module 55Genes 3
GO termDescriptionq-value
GO:0009267 Cellular response to starvation 2.925908e-2
GO:0043488 Regulation of mRNA stability 2.925908e-2
GO:0030308 Negative regulation of cell growth 3.364067e-2
GO:0009372 Quorum sensing 3.364067e-2
GO:0006355 Regulation of transcription, DNA-templated 4.324466e-2
Module 56Genes 2
GO termDescriptionq-value
GO:0046686 Response to cadmium ion 1.396940e-2
GO:0070574 Cadmium ion transmembrane transport 1.867116e-2
GO:0006824 Cobalt ion transport 2.289396e-2
GO:0071577 Zinc ion transmembrane transport 2.289396e-2
GO:0006829 Zinc ion transport 2.648173e-2
GO:0035444 Nickel cation transmembrane transport 2.648173e-2
Module 57Genes 2
GO termDescriptionq-value
GO:0010628 Positive regulation of gene expression 2.289396e-2
GO:0009372 Quorum sensing 2.648173e-2
Module 58Genes 2
GO termDescriptionq-value
GO:0008643 Carbohydrate transport 5.224916e-4
GO:0035435 Phosphate ion transmembrane transport 2.289396e-2
Module 59Genes 2
GO termDescriptionq-value
GO:0006268 DNA unwinding involved in DNA replication 2.289396e-2
GO:0006265 DNA topological change 2.289396e-2
GO:0060567 Negative regulation of DNA-templated transcription, termination 2.289396e-2
GO:0009409 Response to cold 3.472054e-2
GO:0031564 Transcription antitermination 3.981230e-2
GO:0007059 Chromosome segregation 4.249869e-2
Module 60Genes 2
GO termDescriptionq-value
GO:0033212 Iron assimilation 2.289396e-2
Module 61Genes 2
GO termDescriptionq-value
GO:0006355 Regulation of transcription, DNA-templated 2.289396e-2
Module 62Genes 2
GO termDescriptionq-value
GO:0031669 Cellular response to nutrient levels 1.396940e-2
GO:0009267 Cellular response to starvation 2.289396e-2
Module 63Genes 2
GO termDescriptionq-value
GO:0044010 Single-species biofilm formation 7.869144e-4
GO:0045947 Negative regulation of translational initiation 2.648173e-2
GO:0006402 MRNA catabolic process 4.249869e-2
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic 4.868032e-2
Module 64Genes 2
GO termDescriptionq-value
GO:0046688 Response to copper ion 2.540326e-4
Module 65Genes 2
GO termDescriptionq-value
GO:0009082 Branched-chain amino acid biosynthetic process 1.867116e-2
GO:0009097 Isoleucine biosynthetic process 3.732801e-2
GO:0009099 Valine biosynthetic process 3.981230e-2
Module 67Genes 2
GO termDescriptionq-value
GO:0022611 Dormancy process 2.289396e-2
GO:0043086 Negative regulation of catalytic activity 3.472054e-2
Module 68Genes 2
GO termDescriptionq-value
GO:0009405 Pathogenesis 2.290142e-5
Module 69Genes 2
GO termDescriptionq-value
GO:0006559 L-phenylalanine catabolic process 1.396940e-2
GO:0009435 NAD biosynthetic process 2.648173e-2
Not annotated modules
Module Genes
1.13 1
1.14 1
1.15 1
1.23 1
1.26 2
1.39 3
1.43 1
39 4
51 3
52 3
53 3
66 2