Bacillus subtilis (strain 168) (DBTBS, SubtiWiki, 2015)

Annotated modules (70%)
Module 1.1Genes 40
GO termDescriptionq-value
GO:0006865 Amino acid transport 1.862685e-4
GO:0006829 Zinc ion transport 1.045492e-3
GO:0019285 Glycine betaine biosynthetic process from choline 2.859133e-3
GO:0031460 Glycine betaine transport 7.341307e-3
GO:0019478 D-amino acid catabolic process 4.414883e-2
Module 1.2Genes 31
GO termDescriptionq-value
GO:0006782 Protoporphyrinogen IX biosynthetic process 9.790647e-7
GO:0030001 Metal ion transport 1.830508e-3
GO:0045490 Pectin catabolic process 2.273479e-3
GO:0017000 Antibiotic biosynthetic process 4.031054e-3
Module 1.3Genes 21
GO termDescriptionq-value
GO:0042128 Nitrate assimilation 3.330907e-7
GO:0006457 Protein folding 9.557896e-4
GO:0016999 Antibiotic metabolic process 1.732706e-2
Module 1.4Genes 12
GO termDescriptionq-value
GO:0006096 Glycolytic process 9.246531e-7
GO:0006098 Pentose-phosphate shunt 3.945721e-4
GO:0006006 Glucose metabolic process 1.370068e-3
GO:0006355 Regulation of transcription, DNA-templated 3.642406e-2
Module 1.5Genes 15
GO termDescriptionq-value
GO:0006355 Regulation of transcription, DNA-templated 6.885498e-3
GO:0006351 Transcription, DNA-templated 3.965454e-2
Module 1.6Genes 10
GO termDescriptionq-value
GO:0006435 Threonyl-tRNA aminoacylation 1.157397e-4
GO:0006813 Potassium ion transport 9.557896e-4
GO:0006814 Sodium ion transport 3.684202e-3
GO:0051289 Protein homotetramerization 3.330568e-2
GO:0030497 Fatty acid elongation 3.330568e-2
Module 1.7Genes 15
GO termDescriptionq-value
GO:0043953 Protein transport by the Tat complex 2.273479e-3
GO:0019439 Aromatic compound catabolic process 2.108490e-2
GO:0030091 Protein repair 2.374679e-2
GO:0009636 Response to toxic substance 3.091631e-2
GO:0006464 Cellular protein modification process 3.110626e-2
GO:0006979 Response to oxidative stress 4.727829e-2
Module 1.8Genes 20
GO termDescriptionq-value
GO:0009228 Thiamine biosynthetic process 7.890222e-3
GO:0009229 Thiamine diphosphate biosynthetic process 7.890222e-3
GO:0006810 Transport 1.184385e-2
GO:0006011 UDP-glucose metabolic process 3.642406e-2
GO:0009246 Enterobacterial common antigen biosynthetic process 4.727829e-2
Module 1.10Genes 11
GO termDescriptionq-value
GO:0006865 Amino acid transport 1.862685e-4
GO:0006829 Zinc ion transport 1.045492e-3
GO:0019285 Glycine betaine biosynthetic process from choline 2.859133e-3
GO:0031460 Glycine betaine transport 7.341307e-3
GO:0019478 D-amino acid catabolic process 4.414883e-2
Module 1.11Genes 9
GO termDescriptionq-value
GO:0043953 Protein transport by the Tat complex 4.266483e-2
Module 1.12Genes 6
GO termDescriptionq-value
GO:0006351 Transcription, DNA-templated 4.263787e-2
Module 1.14Genes 10
GO termDescriptionq-value
GO:0019439 Aromatic compound catabolic process 1.229008e-4
GO:0009636 Response to toxic substance 2.443189e-4
Module 1.15Genes 22
GO termDescriptionq-value
GO:0006810 Transport 1.475681e-5
Module 1.18Genes 6
GO termDescriptionq-value
GO:0006006 Glucose metabolic process 3.642406e-2
GO:0008295 Spermidine biosynthetic process 4.414883e-2
Module 1.19Genes 6
GO termDescriptionq-value
GO:0019521 D-gluconate metabolic process 5.274678e-4
GO:0046177 D-gluconate catabolic process 3.330568e-2
Module 1.20Genes 29
GO termDescriptionq-value
GO:0006782 Protoporphyrinogen IX biosynthetic process 9.790647e-7
GO:0030001 Metal ion transport 1.830508e-3
GO:0045490 Pectin catabolic process 2.273479e-3
GO:0017000 Antibiotic biosynthetic process 4.031054e-3
Module 1.21Genes 5
GO termDescriptionq-value
GO:0045893 Positive regulation of transcription, DNA-templated 1.189643e-3
Module 1.23Genes 19
GO termDescriptionq-value
GO:0006281 DNA repair 3.642406e-2
Module 1.25Genes 9
GO termDescriptionq-value
GO:0009229 Thiamine diphosphate biosynthetic process 3.255368e-11
GO:0009228 Thiamine biosynthetic process 9.386318e-9
Module 1.26Genes 27
GO termDescriptionq-value
GO:0006564 L-serine biosynthetic process 1.101362e-3
GO:0019354 Siroheme biosynthetic process 2.835620e-3
GO:0009236 Cobalamin biosynthetic process 5.101752e-3
GO:0019344 Cysteine biosynthetic process 5.101752e-3
GO:0000103 Sulfate assimilation 1.112547e-2
GO:0070814 Hydrogen sulfide biosynthetic process 1.865007e-2
Module 1.27Genes 13
GO termDescriptionq-value
GO:0046685 Response to arsenic-containing substance 1.088409e-3
Module 1.28Genes 19
GO termDescriptionq-value
GO:0045150 Acetoin catabolic process 3.114261e-8
GO:0019310 Inositol catabolic process 9.134787e-3
GO:0006096 Glycolytic process 4.467641e-2
Module 1.29Genes 20
GO termDescriptionq-value
GO:0019569 L-arabinose catabolic process to xylulose 5-phosphate 1.235675e-5
GO:0008643 Carbohydrate transport 3.162624e-5
GO:0031222 Arabinan catabolic process 3.912690e-5
GO:0046373 L-arabinose metabolic process 8.481517e-4
Module 1.30Genes 12
GO termDescriptionq-value
GO:0042128 Nitrate assimilation 3.330907e-7
GO:0006457 Protein folding 9.557896e-4
GO:0016999 Antibiotic metabolic process 1.732706e-2
Module 1.31Genes 7
GO termDescriptionq-value
GO:0071555 Cell wall organization 4.637818e-2
Module 1.34Genes 13
GO termDescriptionq-value
GO:0042773 ATP synthesis coupled electron transport 5.576752e-7
Module 1.37Genes 2
GO termDescriptionq-value
GO:0006044 N-acetylglucosamine metabolic process 1.732706e-2
GO:0019262 N-acetylneuraminate catabolic process 2.374679e-2
Module 1.40Genes 13
GO termDescriptionq-value
GO:0006096 Glycolytic process 9.246531e-7
GO:0006098 Pentose-phosphate shunt 3.945721e-4
GO:0006006 Glucose metabolic process 1.370068e-3
GO:0006355 Regulation of transcription, DNA-templated 3.642406e-2
Module 1.41Genes 2
GO termDescriptionq-value
GO:0006725 Cellular aromatic compound metabolic process 2.951363e-2
Module 1.43Genes 7
GO termDescriptionq-value
GO:0006869 Lipid transport 4.727829e-2
Module 1.45Genes 4
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 2.816265e-4
Module 1.46Genes 9
GO termDescriptionq-value
GO:0006099 Tricarboxylic acid cycle 1.380468e-6
GO:0044262 Cellular carbohydrate metabolic process 1.088409e-3
GO:0006108 Malate metabolic process 4.727829e-2
Module 1.47Genes 14
GO termDescriptionq-value
GO:0009114 Hypoxanthine catabolic process 1.526841e-7
GO:0006144 Purine nucleobase metabolic process 3.864160e-7
Module 1.48Genes 5
GO termDescriptionq-value
GO:0042732 D-xylose metabolic process 3.110626e-2
GO:0045493 Xylan catabolic process 3.642406e-2
Module 1.49Genes 9
GO termDescriptionq-value
GO:0006096 Glycolytic process 9.987456e-3
GO:0019605 Butyrate metabolic process 3.642406e-2
Module 1.51Genes 5
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 9.338776e-6
Module 1.52Genes 2
GO termDescriptionq-value
GO:0045893 Positive regulation of transcription, DNA-templated 4.414883e-2
Module 1.53Genes 1
GO termDescriptionq-value
GO:0006353 DNA-templated transcription, termination 2.374679e-2
Module 1.55Genes 4
GO termDescriptionq-value
GO:0006269 DNA replication, synthesis of RNA primer 3.110626e-2
Module 1.56Genes 16
GO termDescriptionq-value
GO:0006457 Protein folding 9.984579e-3
GO:0006950 Response to stress 9.984579e-3
Module 1.58Genes 16
GO termDescriptionq-value
GO:0055072 Iron ion homeostasis 1.417685e-3
GO:0006811 Ion transport 2.186642e-3
GO:0006364 RRNA processing 9.936041e-3
Module 1.59Genes 4
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 7.341307e-3
Module 1.60Genes 13
GO termDescriptionq-value
GO:0006435 Threonyl-tRNA aminoacylation 1.157397e-4
GO:0006813 Potassium ion transport 9.557896e-4
GO:0006814 Sodium ion transport 3.684202e-3
GO:0051289 Protein homotetramerization 3.330568e-2
GO:0030497 Fatty acid elongation 3.330568e-2
Module 1.61Genes 7
GO termDescriptionq-value
GO:0030420 Establishment of competence for transformation 3.223818e-10
GO:0006810 Transport 1.854205e-2
Module 1.62Genes 3
GO termDescriptionq-value
GO:0044283 Small molecule biosynthetic process 3.642406e-2
GO:0016311 Dephosphorylation 4.727829e-2
Module 1.63Genes 1
GO termDescriptionq-value
GO:0045892 Negative regulation of transcription, DNA-templated 4.118651e-2
Module 1.66Genes 11
GO termDescriptionq-value
GO:0043953 Protein transport by the Tat complex 4.266483e-2
Module 1.67Genes 4
GO termDescriptionq-value
GO:0042128 Nitrate assimilation 1.800709e-3
GO:0045333 Cellular respiration 3.642406e-2
Module 1.68Genes 13
GO termDescriptionq-value
GO:0006810 Transport 1.854205e-2
GO:0046677 Response to antibiotic 2.981304e-2
Module 1.70Genes 5
GO termDescriptionq-value
GO:0043953 Protein transport by the Tat complex 2.273479e-3
GO:0019439 Aromatic compound catabolic process 2.108490e-2
GO:0030091 Protein repair 2.374679e-2
GO:0009636 Response to toxic substance 3.091631e-2
GO:0006464 Cellular protein modification process 3.110626e-2
GO:0006979 Response to oxidative stress 4.727829e-2
Module 1.71Genes 4
GO termDescriptionq-value
GO:0005975 Carbohydrate metabolic process 7.470249e-4
Module 1.72Genes 7
GO termDescriptionq-value
GO:0042744 Hydrogen peroxide catabolic process 3.642406e-2
Module 1.77Genes 3
GO termDescriptionq-value
GO:0009450 Gamma-aminobutyric acid catabolic process 2.374679e-2
Module 1.78Genes 10
GO termDescriptionq-value
GO:0046656 Folic acid biosynthetic process 1.673507e-10
GO:0046654 Tetrahydrofolate biosynthetic process 4.595955e-10
Module 1.79Genes 7
GO termDescriptionq-value
GO:0005975 Carbohydrate metabolic process 3.360529e-2
Module 1.80Genes 10
GO termDescriptionq-value
GO:0009228 Thiamine biosynthetic process 7.890222e-3
GO:0009229 Thiamine diphosphate biosynthetic process 7.890222e-3
GO:0006810 Transport 1.184385e-2
GO:0006011 UDP-glucose metabolic process 3.642406e-2
GO:0009246 Enterobacterial common antigen biosynthetic process 4.727829e-2
Module 1.81Genes 12
GO termDescriptionq-value
GO:0006064 Glucuronate catabolic process 2.899863e-4
Module 1.82Genes 15
GO termDescriptionq-value
GO:0015774 Polysaccharide transport 1.609834e-4
GO:0008643 Carbohydrate transport 1.673125e-2
Module 1.85Genes 6
GO termDescriptionq-value
GO:0006108 Malate metabolic process 4.727829e-2
Module 2Genes 33
GO termDescriptionq-value
GO:0006635 Fatty acid beta-oxidation 3.534479e-13
GO:0055114 Oxidation-reduction process 1.498296e-2
Module 3Genes 18
GO termDescriptionq-value
GO:0006865 Amino acid transport 6.906312e-11
Module 4Genes 16
GO termDescriptionq-value
GO:0042744 Hydrogen peroxide catabolic process 3.110626e-2
GO:0006537 Glutamate biosynthetic process 4.266483e-2
Module 5Genes 14
GO termDescriptionq-value
GO:0019556 Histidine catabolic process to glutamate and formamide 3.397369e-8
GO:0019557 Histidine catabolic process to glutamate and formate 3.397369e-8
GO:0042838 D-glucarate catabolic process 5.072655e-4
Module 6Genes 13
GO termDescriptionq-value
GO:0055085 Transmembrane transport 8.481517e-4
Module 7Genes 11
GO termDescriptionq-value
GO:0019439 Aromatic compound catabolic process 5.245846e-11
GO:0009636 Response to toxic substance 3.037870e-10
Module 8Genes 10
GO termDescriptionq-value
GO:0006396 RNA processing 3.642406e-2
GO:0070526 Threonylcarbamoyladenosine biosynthetic process 4.727829e-2
Module 9Genes 10
GO termDescriptionq-value
GO:0044205 'de novo' UMP biosynthetic process 4.303853e-18
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 1.263786e-5
Module 10Genes 9
GO termDescriptionq-value
GO:0000272 Polysaccharide catabolic process 1.938003e-5
GO:0015774 Polysaccharide transport 8.834892e-5
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 3.386916e-3
GO:0046148 Pigment biosynthetic process 4.727829e-2
Module 11Genes 9
GO termDescriptionq-value
GO:0009098 Leucine biosynthetic process 3.397369e-8
GO:0009099 Valine biosynthetic process 1.432834e-5
GO:0009097 Isoleucine biosynthetic process 6.415034e-5
Module 12Genes 9
GO termDescriptionq-value
GO:0006525 Arginine metabolic process 2.973121e-13
Module 13Genes 8
GO termDescriptionq-value
GO:0009252 Peptidoglycan biosynthetic process 2.405127e-3
GO:0008360 Regulation of cell shape 3.331863e-3
GO:0071555 Cell wall organization 2.333786e-2
GO:0051301 Cell division 2.951363e-2
GO:0007049 Cell cycle 3.188137e-2
GO:0019277 UDP-N-acetylgalactosamine biosynthetic process 4.414883e-2
Module 14Genes 8
GO termDescriptionq-value
GO:0006085 Acetyl-CoA biosynthetic process 4.118651e-2
GO:0071271 1-butanol biosynthetic process 4.118651e-2
Module 15Genes 7
GO termDescriptionq-value
GO:0006814 Sodium ion transport 5.765832e-3
GO:0055085 Transmembrane transport 4.051978e-2
GO:0009605 Response to external stimulus 4.266483e-2
GO:0006108 Malate metabolic process 4.266483e-2
Module 16Genes 7
GO termDescriptionq-value
GO:0006825 Copper ion transport 3.061253e-6
Module 18Genes 6
GO termDescriptionq-value
GO:0090501 RNA phosphodiester bond hydrolysis 2.951363e-2
GO:0006396 RNA processing 2.951363e-2
GO:0006535 Cysteine biosynthetic process from serine 4.414883e-2
Module 19Genes 6
GO termDescriptionq-value
GO:0019284 L-methionine biosynthetic process from S-adenosylmethionine 4.151823e-6
GO:0019509 L-methionine biosynthetic process from methylthioadenosine 6.439017e-6
Module 20Genes 6
GO termDescriptionq-value
GO:0005975 Carbohydrate metabolic process 7.470249e-4
GO:0009254 Peptidoglycan turnover 3.642406e-2
Module 21Genes 6
GO termDescriptionq-value
GO:0006426 Glycyl-tRNA aminoacylation 1.475681e-5
Module 22Genes 6
GO termDescriptionq-value
GO:0045808 Negative regulation of establishment of competence for transformation 2.951363e-2
GO:0042174 Negative regulation of sporulation resulting in formation of a cellular spore 3.642406e-2
Module 23Genes 6
GO termDescriptionq-value
GO:0009401 Phosphoenolpyruvate-dependent sugar phosphotransferase system 2.303233e-7
Module 24Genes 6
GO termDescriptionq-value
GO:0006071 Glycerol metabolic process 6.906312e-11
GO:0019563 Glycerol catabolic process 1.609834e-4
GO:0006072 Glycerol-3-phosphate metabolic process 1.609834e-4
GO:0031564 Transcription antitermination 3.642406e-2
Module 26Genes 5
GO termDescriptionq-value
GO:0019262 N-acetylneuraminate catabolic process 1.862685e-4
GO:0005975 Carbohydrate metabolic process 2.428021e-2
GO:0006044 N-acetylglucosamine metabolic process 2.951363e-2
Module 27Genes 5
GO termDescriptionq-value
GO:0017000 Antibiotic biosynthetic process 5.232065e-4
Module 28Genes 4
GO termDescriptionq-value
GO:0097054 L-glutamate biosynthetic process 7.227828e-5
GO:0006537 Glutamate biosynthetic process 5.274678e-4
Module 29Genes 4
GO termDescriptionq-value
GO:0006412 Translation 5.963408e-3
Module 30Genes 4
GO termDescriptionq-value
GO:0006437 Tyrosyl-tRNA aminoacylation 1.475681e-5
Module 31Genes 4
GO termDescriptionq-value
GO:0006089 Lactate metabolic process 7.227828e-5
Module 32Genes 4
GO termDescriptionq-value
GO:0006824 Cobalt ion transport 1.653077e-7
GO:0006829 Zinc ion transport 7.470249e-4
GO:0006813 Potassium ion transport 9.557896e-4
Module 33Genes 4
GO termDescriptionq-value
GO:0010133 Proline catabolic process to glutamate 7.227828e-5
GO:0006537 Glutamate biosynthetic process 3.330568e-2
Module 35Genes 3
GO termDescriptionq-value
GO:0009605 Response to external stimulus 2.374679e-2
GO:0006101 Citrate metabolic process 2.951363e-2
Module 37Genes 3
GO termDescriptionq-value
GO:0019647 Formaldehyde assimilation via ribulose monophosphate cycle 3.935151e-5
GO:0009636 Response to toxic substance 3.981679e-3
GO:0005975 Carbohydrate metabolic process 1.414864e-2
GO:0006730 One-carbon metabolic process 3.110626e-2
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process 3.642406e-2
Module 39Genes 3
GO termDescriptionq-value
GO:0046677 Response to antibiotic 6.140197e-3
GO:0006810 Transport 3.330568e-2
Module 42Genes 3
GO termDescriptionq-value
GO:0045893 Positive regulation of transcription, DNA-templated 4.414883e-2
Module 46Genes 2
GO termDescriptionq-value
GO:0009605 Response to external stimulus 2.374679e-2
Module 50Genes 2
GO termDescriptionq-value
GO:0008299 Isoprenoid biosynthetic process 1.732706e-2
Not annotated modules
Module Genes
1.9 5
1.13 16
1.16 16
1.17 20
1.22 10
1.24 4
1.32 7
1.33 2
1.35 3
1.36 1
1.38 4
1.39 3
1.42 2
1.44 8
1.50 11
1.54 1
1.57 2
1.64 5
1.65 5
1.69 11
1.73 1
1.74 1
1.75 1
1.76 7
1.83 2
1.84 1
17 7
25 5
34 4
36 3
38 3
40 3
41 3
43 3
44 2
45 2
47 2
48 2
49 2
51 2
52 2