Escherichia coli str. K-12 substr. MG1655 (Strong Evidences)

Basal machinery genes
Gene Product description
accA acetyl-CoA carboxyltransferase, α subunit
accB biotin carboxyl carrier protein
accC AccC
accD acetyl-CoA carboxyltransferase, β subunit
acnB bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase
acpP apo-[acyl carrier protein]
acpS AcpS
acrR AcrR DNA-binding transcriptional repressor
acs acetyl-CoA synthetase (AMP-forming)
actP --
adeD cryptic adenine deaminase monomer
alaS alanyl-tRNA synthetase
aldB --
alsA D-allose ABC transporter - ATP binding subunit
alsB D-allose ABC transporter - periplasmic binding protein
alsC D-allose ABC transporter - membrane subunit
alsE allulose-6-phosphate 3-epimerase
amiA N-acetylmuramoyl-L-alanine amidase 1
amiB N-acetylmuramoyl-L-alanine amidase 2
ampC β-lactamase; penicillin resistance
ansB AnsB
ansP L-asparagine transporter
appY AppY DNA-binding transcriptional activator
apt adenine phosphoribosyltransferase
arfA ribosome rescue factor
aroA 3-phosphoshikimate-1-carboxyvinyltransferase
aroB 3-dehydroquinate synthase
aroK shikimate kinase I
asnA AsnA
asnC AsnC
aspA AspA
atpA ATP synthase F1 complex - alpha subunit
atpB ATP synthase F0 complex - a subunit
atpC ATP synthase F1 complex - epsilon subunit
atpD ATP synthase F1 complex - beta subunit
atpE --
atpF ATP synthase F0 complex - b subunit
atpG ATP synthase F1 complex - gamma subunit
atpH ATP synthase F1 complex - delta subunit
atpI AtpI
azoR NADH:quinone oxidoreductase, FMN-dependent
azuC small membrane protein
b0201 --
b0202 --
b0203 --
b0204 --
b0205 --
b0971 --
b1230 --
b1231 --
b1665 --
b1666 --
b1954 --
b2401 --
b2402 --
b2403 --
b2404 --
b2588 --
b2589 --
b2590 --
b2591 --
b2814 --
b2815 --
b2816 --
b2911 --
b3123 --
b3174 --
b3272 --
b3273 --
b3274 --
b3275 --
b3276 --
b3277 --
b3278 --
b3756 --
b3757 --
b3758 --
b3759 --
b3796 --
b3797 --
b3798 --
b3799 --
b3851 --
b3852 --
b3853 --
b3854 --
b3855 --
b3864 --
b3968 --
b3969 --
b3970 --
b3971 --
b3976 --
b3977 --
b3978 --
b3979 --
b4007 --
b4008 --
b4009 --
b4010 --
b4408 --
b4414 --
b4417 --
b4426 --
b4427 --
b4436 --
b4437 --
b4438 --
b4447 --
b4451 --
b4452 --
b4454 --
b4456 --
b4597 --
b4608 --
b4609 --
b4611 --
b4616 --
b4624 --
b4625 --
b4698 --
b4699 --
b4707 --
bamA Outer Membrane Protein Assembly Complex - BamA subunit
bamB Outer Membrane Protein Assembly Complex - BamB subunit
bamC Outer Membrane Protein Assembly Complex - BamC subunit
bamD Outer Membrane Protein Assembly Complex - BamD subunit
bamE Outer Membrane Protein Assembly Complex - BamE subunit
bcp thiol peroxidase
bepA chaperone/protease involved in the maintenance of OM integrity
betA choline dehydrogenase
betB BetB
betI BetI DNA-binding transcriptional repressor
betT choline:H+ symporter
bfr bacterioferritin monomer
blc Blc outer membrane lipoprotein (lipocalin)
bssS regulator of biofilm formation
btuF vitamin B12 ABC transporter - periplasmic binding protein
can carbonic anhydrase 2 monomer
cbpA CbpA monomer
cbpM chaperone modulator protein CbpM
cca fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase
cdsA CDP-diglyceride synthetase
cfa cyclopropane fatty acyl phospholipid synthase
chiA endochitinase
chiX MicM
cirA outer membrane receptor involved in uptake of ferric dihyroxybenzoylserine
clpA ClpA
clpB ClpB chaperone
clpP ClpP
clpX ClpX
cmk cytidylate kinase
coaD pantetheine-phosphate adenylyltransferase monomer
cobS cobalamin 5'-phosphate synthase
cobT CobT
cobU CobU
cpdB 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase
creA conserved protein
creC CreC
csiD predicted protein
csiE stationary phase inducible protein
cspA CspA DNA-binding transcriptional activator
cspC stress protein, member of the CspA family
csrA carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism
cstA peptide transporter induced by carbon starvation
cutA copper binding protein CutA
cutC copper homeostasis protein
cyaA adenylate cyclase
cyaY frataxin, iron-binding and oxidizing protein
cydC glutathione / L-cysteine efflux transporter - CydC subunit
cydD glutathione / L-cysteine efflux transporter - CydD subunit
cysC CysC
cysD sulfate adenylyltransferase, CysD subunit
cysH CysH
cysI sulfite reductase, hemoprotein subunit
cysJ sulfite reductase, flavoprotein subunit
cysN sulfate adenylyltransferase, CysN subunit
dacA D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5
dadA D-amino acid dehydrogenase
dadX --
dam DNA adenine methyltransferase
damX cell division protein DamX
dapA 4-hydroxy-tetrahydrodipicolinate synthase
dapF --
dcuA dicarboxylate transporter DcuA
dcuS DcuS sensory histidine kinase
deaD DeaD, DEAD-box RNA helicase
def peptide deformylase
der 50S ribosomal subunit stability factor
dksA RNA polymerase-binding transcription factor DksA
dld D-lactate dehydrogenase
dmsD DMS reductase maturation protein
dnaE DNA polymerase III, α subunit
dnaJ chaperone protein DnaJ
dnaK chaperone protein DnaK
dppA dipeptide ABC transporter - periplasmic binding protein
dppB dipeptide ABC transporter - putative membrane subunit
dppC dipeptide ABC transporter - putative membrane subunit
dppD dipeptide ABC transporter - putative ATP binding subunit
dppF dipeptide ABC transporter - putative ABC binding subunit
dps stationary phase nucleoid protein that sequesters iron and protects DNA from damage
dsbC DsbC monomer
dsdA D-serine ammonia-lyase
dsdX D-serine transporter
dusB tRNA-dihydrouridine synthase B
ecnB entericidin B
entA EntA
entB EntB monomer
entC isochorismate synthase 1
entD phosphopantetheinyl transferase/phosphopantetheinyl transferase
entE EntE
entF apo-serine activating enzyme
entH proofreading thioesterase in enterobactin biosynthesis
entS enterobactin efflux transporter EntS
envC EnvC divisome associated factor, activator of peptidoglycan hydrolases
envZ EnvZ
eptB phosphoethanolamine transferase EptB
era GTP-binding protein
essD DLP12 prophage; predicted phage lysis protein
exbB TonB energy transducing system - ExbB subunit
exbD tonB energy transducing system - ExbD subunit
fabF FabF
fabZ FabZ
fadA 3-ketoacyl-CoA thiolase
fadB dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase
fbaB fructose bisphosphate aldolase monomer
fdhE formate dehydrogenase formation protein
fdx reduced ferredoxin
fecR regulator for fec operon, periplasmic
fepA ferric enterobactin / colicin B / colicin D outer membrane porin FepA
fepC ferric enterobactin ABC transporter - ATP binding subunit
fepD ferric enterobactin ABC transporter - membrane subunit
fepE ferric enterobactin (enterochelin) transport
fepG ferric enterobactin ABC transporter - membrane subunit
fes enterochelin esterase
fetA ABC transporter with a role in iron homeostasis - ATP-binding subunit
fetB ABC transporter with a role in iron homeostasis - membrane subunit
fhuA ferrichrome / phage / antibiotic outer membrane porin FhuA
fhuB iron (III) hydroxamate ABC transporter - membrane subunit
fhuC iron (III) hydroxamate ABC transporter - ATP binding subunit
fhuD iron (III) hydroxamate ABC transporter - periplasmic binding protein
fieF FieF
fimA major type 1 subunit fimbrin (pilin)
fimC periplasmic chaperone, required for type 1 fimbriae
fimD FimD monomer
fimF fimbrial morphology
fimG fimbrial morphology
fimH minor fimbrial subunit, D-mannose specific adhesin
fimI fimbrial protein
fkpA peptidyl-prolyl cis-trans isomerase; in protein folding
fkpB peptidyl-prolyl cis-trans isomerase
fldB flavodoxin 2
fmt 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase
focA --
focB FocB formate FNT transporter
folK 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase
frsA fermentation/respiration switch protein
ftnA ferritin iron storage protein
ftsH ATP-dependent zinc metalloprotease FtsH
fucI --
fucK L-fuculokinase
fucP fucose:H+ symporter
fucR FucR transcriptional activator
fucU L-fucose mutarotase
fumA fumarase A monomer
fusA elongation factor G
fxsA inner membrane protein; overproduction inhibits F exclusion of bacteriophage T7
gabD --
gabP 4-aminobutyrate:H+ symporter
gabT 4-aminobutyrate aminotransferase monomer
garK glycerate kinase I
garL --
garP galactarate / glucarate / glycerate transporter GarP
garR tartronate semialdehyde reductase
gatA galactitol PTS permease - GatA subunit
gatB galactitol PTS permease - GatB subunit
gatC galactitol PTS permease - GatC subunit
gatD galactitol-1-phosphate dehydrogenase
gatY GatY
gatZ --
gcd quinoprotein glucose dehydrogenase
gcvR GcvR predicted transcriptional regulator
glgA glycogen synthase
glgB 1,4-α-glucan branching enzyme
glgC GlgC
glgP GlgP
glgS surface composition regulator
glgX glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase
glk glucokinase/glucokinase
glnB PII
glpE --
glpG intramembrane serine protease GlpG
glrK GlrK sensory histidine kinase
gltA citrate synthase monomer
gltX glutamyl-tRNA synthetase
gluQ glutamyl-Q tRNAAsp synthetase
glyQ glycyl-tRNA synthetase, α subunit
glyS glycyl-tRNA synthetase, β subunit
gmk guanylate kinase
gnd Gnd
gph phosphoglycolate phosphatase
gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase monomer
gpmI --
grcA stress-induced alternate pyruvate formate-lyase subunit
greA transcription elongation factor GreA
groL GroEL chaperonin
groS GroES cochaperonin
grpE nucleotide exchange factor GrpE
gspA general secretory pathway component, cryptic
gspB calcium-binding protein required for initiation of chromosome replication
gspC putative protein secretion protein for export
gspD putative protein secretion protein for export
gspE putative protein secretion protein for export
gspF putative protein secretion protein for export
gspG putative protein secretion protein for export
gspH putative protein secretion protein for export
gspI putative protein secretion protein for export
gspJ putative protein secretion protein for export
gspK putative protein secretion protein for export
gspL putative protein secretion protein for export
gspM putative protein secretion protein
gspO leader peptidase, integral membrane protein
gutM GutM DNA-binding transcriptional activator
gutQ D-arabinose 5-phosphate isomerase
gyrA DNA gyrase, subunit A
gyrB DNA gyrase, subunit B
hchA glyoxalase III, Hsp31 molecular chaperone
hemA --
hemF coproporphyrinogen III oxidase
hemN coproporphyrinogen III dehydrogenase
hflC regulator of FtsH protease
hflK regulator of FtsH protease
hflX GTPase associated with the 50S subunit of the ribosome
hfq RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins
hicA toxin of the HicA-HicB toxin-antitoxin system
hicB antitoxin of the HicA-HicB toxin-antitoxin system
higA antitoxin of the HigB-HigA toxin-antitoxin system
higB translation-dependent mRNA interferase, toxin of the HigB-HigA toxin-antitoxin system
hisA N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase
hisB --
hisF imidazole glycerol phosphate synthase, HisF subunit
hisH imidazole glycerol phosphate synthase, HisH subunit
hisI phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase
hisS histidyl-tRNA synthetase
hldD --
hofB protein involved in plasmid replication
hofC protein transport protein HofC
hofM protein involved in utilization of DNA as a carbon source
hofN protein involved in utilization of DNA as a carbon source
hofO protein involved in utilization of DNA as a carbon source
hofP protein involved in utilization of DNA as a carbon source
holC DNA polymerase III, χ subunit
hpf hibernation promoting factor
hpt hypoxanthine-guanine phosphoribosyltransferase
hscA chaperone for [Fe-S] cluster biosynthesis
hscB co-chaperone for [Fe-S] cluster biosynthesis
hslO molecular chaperone Hsp33
hslR heat shock protein Hsp15 involved in ribosome recycling
hslU ATPase component of the HslVU protease
hslV peptidase component of the HslVU protease
htgA predicted DNA-binding transcriptional regulator
htpX heat shock protein, integral membrane protein
htrE putative outer membrane usher protein
hybA hydrogenase 2 4Fe-4S ferredoxin-type component
hybB predicted hydrogenase 2 cytochrome b type component
hybC hydrogenase 2, large subunit
hybD predicted maturation peptidase for hydrogenase 2
hybE hydrogenase 2-specific chaperone
hybF protein involved with the maturation of hydrogenases 1 and 2
hybG hydrogenase 2 accessory protein
hybO hydrogenase 2, small subunit
hyfA hydrogenase 4, component A
hyfB hydrogenase 4, component B
hyfC hydrogenase 4, component C
hyfD hydrogenase 4, component D
hyfE hydrogenase 4, component E
hyfF hydrogenase 4, component F
hyfG hydrogenase 4, large subunit
hyfH hydrogenase 4, component H
hyfI hydrogenase 4, small subunit
hyfJ hydrogenase 4 component J, putative protein processing element
hyfR HyfR DNA-binding transcriptional activator
ibpA small heat shock protein IbpA
ibpB small heat shock protein IbpB
idnK D-gluconate kinase, thermosensitive
ileS isoleucyl-tRNA synthetase
ilvA IlvA
ilvB acetohydroxy acid synthase I, large subunit
ilvD IlvD
ilvE IlvE
ilvG_1 acetolactate synthase II, large subunit, N-ter fragment (pseudogene)
ilvG_2 acetolactate synthase II, large subunit, C-ter fragment (pseudogene)
ilvH IlvH
ilvI IlvI
ilvL ilvGEDA operon leader peptide
ilvM IlvM
ilvN acetohydroxy acid synthase I, small subunit
ilvX small protein
infA protein chain initiation factor IF-1
infC protein chain initiation factor IF-3
insC5 --
insCD-5 IS2 element transposase InsAB'
insD5 --
insH11 --
insI1 --
insN1 --
insO1 --
intS CPS-53 (KpLE1) prophage; prophage CPS-53 integrase
iraD inhibitor of σS proteolysis
iraP anti-adaptor protein for σS stabilization
iscX regulator of iron-sulfur cluster assembly
ispH 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase
istR-1 Istr-1
ivbL ilvB operon leader peptide
katE catalase II
kbl Kbl
kdsA 3-deoxy-D-manno-octulosonate 8-phosphate synthase
kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase
kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer
kdsD D-arabinose 5-phosphate isomerase
lapA lipopolysaccharide assembly protein LapA
lapB lipopolysaccharide assembly protein LapB
leuA 2-isopropylmalate synthase
leuB LeuB
leuC LeuC
leuD LeuD
leuL leu operon leader peptide
lhgO L-2-hydroxyglutarate oxidase
lhr member of ATP-dependent helicase superfamily II
lipB lipoyl(octanoyl) transferase
livF branched chain amino acid ABC transporter - ATP binding subunit
livG branched chain amino acid transporter - ATP binding subunit
livH branched chain amino acid transporter - membrane subunit
livJ branched chain amino acid ABC transporter - periplasmic binding protein
livK leucine ABC transporter - periplasmic binding protein
livM branched chain amino acid transporter - membrane subunit
lnt apolipoprotein N-acyltransferase
loiP outer membrane metallopeptidase
lolA periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer
lon Lon
lptA LptA
lptB LptB
lptC LptC
lptD outer membrane lipopolysaccharide transport and assembly complex - LptD subunit
lpxA LpxA
lpxB LpxB
lpxD --
lpxP palmitoleoyl acyltransferase
lspA prolipoprotein signal peptidase II
luxS S-ribosylhomocysteine lyase
lysU lysyl-tRNA synthetase
lyx --
malS α-amylase
manA mannose-6-phosphate isomerase
manX mannose PTS permease - ManX subunit
manY mannose PTS permease - ManY subunit
manZ mannose PTS permease - ManZ subunit
menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase
metB MetB
metH cobalamin-dependent methionine synthase
metK methionine adenosyltransferase
metL MetL
mfd transcription-repair coupling factor
mglA galactose ABC transporter - ATP binding subunit
mglB galactose ABC transporter - periplasmic binding protein
mglC galactose ABC transporter - membrane subunit
miaA tRNA(i6A37) synthase
micA MicA
mioC flavoprotein involved in biotin synthesis
mnmG protein involved in modification of U34 in tRNA
mntP manganese export protein
mntS small protein MntS
moeA molybdopterin molybdenumtransferase
moeB molybdopterin-synthase adenylyltransferase
mpl UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminoheptanedioate-D-alanine ligase/UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase
mreB MreB
mreC MreC
mreD MreD
mscM mechanosensitive channel of miniconductance McsM monomer
msyB acidic protein that suppresses heat sensitivity of a secY mutant
mtnN --
mutL MutL
mutM formamidopyrimidine DNA glycosylase
mutS MutS
nadE NadE
narG nitrate reductase A, α subunit
narH nitrate reductase A, β subunit
narI nitrate reductase A, γ subunit
narJ molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1
narK nitrate:nitrite antiporter NarK
narV nitrate reductase Z, γ subunit
narW NarW, probable private chaperone for NarZ nitrate reductase subunit
nfo endonuclease IV
nhaB sodium:H+ antiporter
nlpC NlpC-putative lipoprotein hydrolase
nlpD NlpD divisome associated factor; activates peptidoglycan hydrolase
nohA Qin prophage; predicted packaging protein
nuoA NADH:ubiquinone oxidoreductase, membrane subunit A
nuoB NADH:ubiquinone oxidoreductase, chain B
nuoC NADH:ubiquinone oxidoreductase, chain CD
nuoE NADH:ubiquinone oxidoreductase, chain E
nuoF NADH:ubiquinone oxidoreductase, chain F
nuoG NADH:ubiquinone oxidoreductase, chain G
nuoH NADH:ubiquinone oxidoreductase, membrane subunit H
nuoI NADH:ubiquinone oxidoreductase, chain I
nuoJ NADH:ubiquinone oxidoreductase, membrane subunit J
nuoK NADH:ubiquinone oxidoreductase, membrane subunit K
nuoL NADH:ubiquinone oxidoreductase, membrane subunit L
nuoM NADH:ubiquinone oxidoreductase, membrane subunit M
nuoN NADH:ubiquinone oxidoreductase, membrane subunit N
nupC nucleoside:H+ symporter NupC
nusB transcription antitermination protein NusB
ogt O6-alkylguanine-DNA-alkyltransferase
ompA outer membrane protein A
ompX outer membrane protein X
opgG periplasmic protein associated with synthesis of osmoregulated periplasmic glucans (OPGs)
opgH membrane glycosyltransferase; synthesis of osmoregulated periplasmic glucans (OPGs)
oppA peptide ABC transporter - periplasmic binding protein
oppB murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit
oppC murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit
oppD murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit
oppF murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit
osmB OsmB osmotically inducible lipoprotein
osmE osmotically inducible protein OsmE
osmF OsmF
otsA trehalose-6-phosphate synthase
otsB trehalose-6-phosphate phosphatase
paaY 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase
pabA PabA
panB 3-methyl-2-oxobutanoate hydroxymethyltransferase monomer
panC pantothenate synthetase monomer
panF pantothenate:Na+ symporter
panZ maturation factor for PanD
patA putrescine aminotransferase
pcm L-isoaspartate protein carboxylmethyltransferase type II
pcnB poly(A) polymerase I
pdxA PdxA
pdxJ PdxJ
pepD peptidase D
pfkB 6-phosphofructokinase-2 monomer
pflB PflB
pgi --
pgpA phosphatidylglycerophosphatase A
pheA PheA
pheL leader peptide of chorismate mutase-P-prephenate dehydratase
pheP phenylalanine:H+ symporter PheP
phr deoxyribodipyrimidine photolyase (photoreactivation)
pka peptidyl-lysine acetyltransferase
plsB glycerol-3-phosphate acyltransferase
pncB nicotinate phosphoribosyltransferase
pncC NMN aminohydrolase
poxB pyruvate oxidase monomer
ppdD prepilin peptidase dependent protein
pphA protein phosphatase 1 modulates phosphoproteins, signals protein misfolding
ppk Ppk
ppx exopolyphosphatase monomer
preA NADH-dependent dihydropyrimidine dehydrogenase subunit
preT NADH-dependent dihydropyrimidine dehydrogenase subunit
prfA peptide chain release factor RF1
prfB peptide chain release factor RF2
priB PriB
prlC oligopeptidase A
prlF PrlF antitoxin
prmA methyltransferase for 50S ribosomal subunit protein L11
prmC protein-(glutamine-N5) methyltransferase
proP ProP
proS prolyl-tRNA synthetase
proV glycine betaine / proline ABC transporter - ATP binding subunit
proW glycine betaine / proline ABC transporter - membrane subunit
proX glycine betaine / proline ABC transporter - periplasmic binding protein
prpB 2-methylisocitrate lyase
prpC 2-methylcitrate synthase
prpD 2-methylcitrate dehydratase
prpE propionyl-CoA synthetase
prs ribose-phosphate diphosphokinase
psd phosphatidylserine decarboxylase, proenzyme
pssA PssA
pth peptidyl-tRNA hydrolase
ptsN phosphotransferase system enzyme IIA, regulation of potassium transport
purE PurE
purK N5-carboxyaminoimidazole ribonucleotide synthetase monomer
purL phosphoribosylformylglycinamide synthetase
purU formyltetrahydrofolate deformylase
puuB γ-glutamylputrescine oxidase
puuC γ-glutamyl-γ-aminobutyraldehyde dehydrogenase
puuD γ-glutamyl-γ-aminobutyrate hydrolase
puuE 4-aminobutyrate aminotransferase
puuR PuuR DNA-binding transcriptional repressor
pykA pyruvate kinase II monomer
pyrD dihydroorotate dehydrogenase, type 2
pyrF PyrF
pyrH UMP kinase
queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase
racR Rac prophage; predicted DNA-binding transcriptional regulator
rapA --
rapZ RNase adaptor protein
rarA recombination factor
rcsD RcsD phosphotransferase
rdgB --
recC RecC
recG RecG DNA helicase
recJ RecJ
recO protein interacts with RecR and possibly RecF proteins
recR recombination and repair
relA GDP pyrophosphokinase/GTP pyrophosphokinase
rfaC --
rfaG --
ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
ribE RibE
ribF bifunctional riboflavin kinase / FMN adenylyltransferase
rihB ribonucleoside hydrolase 2 (pyrimidine-specific)
rimM ribosome maturation protein
rlmE 23S rRNA 2'-O-ribose U2552 methyltransferase
rluA 23S rRNA and tRNA pseudouridine synthase
rnb ribonuclease II
rnc RNase III
rnd RNase D
rne RNase E
rnhB RNAse HII, degrades RNA of DNA-RNA hybrids
rnlB CP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system
roxA ribosomal protein-arginine oxygenase
rpe ribulose-5-phosphate 3-epimerase
rpiB allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer
rpiR AlsR DNA-binding transcriptional repressor
rplB 50S ribosomal subunit protein L2
rplC 50S ribosomal subunit protein L3
rplD 50S ribosomal subunit protein L4
rplI 50S ribosomal subunit protein L9
rplP 50S ribosomal subunit protein L16
rplQ 50S ribosomal subunit protein L17
rplS 50S ribosomal subunit protein L19
rplT 50S ribosomal subunit protein L20
rplV 50S ribosomal subunit protein L22
rplW 50S ribosomal subunit protein L23
rpmC 50S ribosomal subunit protein L29
rpmE 50S ribosomal subunit protein L31
rpmI 50S ribosomal subunit protein L35
rpoA RNA polymerase, α subunit
rpoZ RNA polymerase, ω subunit
rpsA 30S ribosomal subunit protein S1
rpsB 30S ribosomal subunit protein S2
rpsC 30S ribosomal subunit protein S3
rpsD 30S ribosomal subunit protein S4
rpsF 30S ribosomal subunit protein S6
rpsJ 30S ribosomal subunit protein S10
rpsK 30S ribosomal subunit protein S11
rpsM 30S ribosomal subunit protein S13
rpsP 30S ribosomal subunit protein S16
rpsQ 30S ribosomal subunit protein S17
rpsR 30S ribosomal subunit protein S18
rpsS 30S ribosomal subunit protein S19
rraA ribonuclease E inhibitor protein
rraB ribonuclease E inhibitor protein B
rrrD DLP12 prophage; lysozyme
rsd regulator of σ70D), stationary phase protein
rseA anti-sigma factor
rseB rseB
rseC SoxR and σE factor regulatory protein RseC
rseP RseP zinc protease, signal peptide peptidase
rsmG 16S rRNA m7G527 methyltransferase
rsmJ 16S rRNA m2G1516 methyltransferase
rssA conserved protein
rssB regulator of RpoS
rtcA RNA 3'-terminal phosphate cyclase
rtcB RNA ligase
rybA RybA small RNA
rzpD DLP12 prophage; predicted murein endopeptidase
sbmA --
sbmC DNA gyrase inhibitor
sdaA L-serine deaminase I
sdhA succinate:quinone oxidoreductase, FAD binding protein
sdhB succinate:quinone oxidoreductase, iron-sulfur cluster binding protein
sdhC succinate:quinone oxidoreductase, membrane protein SdhC
sdhD succinate:quinone oxidoreductase, membrane protein SdhC
secG SecG
serA --
serC --
sgbE L-ribulose-5-phosphate 4-epimerase
sgbH 3-keto-L-gulonate 6-phosphate decarboxylase
sgbU predicted L-xylulose 5-phosphate 3-epimerase
shiA shikimate:H+ symporter
shoB toxic peptide ShoB
sixA phosphohistidine phosphatase
skp periplasmic chaperone
sodB SodB
sodC superoxide dismutase (Cu-Zn)
sohB predicted inner membrane peptidase
speB SpeB
speD adenosylmethionine decarboxylase, proenzyme
speE SpeE
spoT guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase/GDP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase
srlA sorbitol PTS permease - SrlA subunit
srlB sorbitol PTS permease - SrlB subunit
srlD SrlD
srlE sorbitol PTS permease - SrlE subunit
srlR GutR DNA-binding transcriptional repressor
ssb ssDNA-binding protein
stpA H-NS-like DNA-binding protein with RNA chaperone activity
sucA subunit of E1(0) component of 2-oxoglutarate dehydrogenase
sucB SucB
sucC succinyl-CoA synthetase, β subunit
sucD succinyl-CoA synthetase, α subunit
sulA SOS cell division inhibitor
surA peptidyl-prolyl cis-trans isomerase (PPIase)
talA transaldolase A
tatA TatA
tatB TatB
tatC TatC
tatD ssDNA/RNA exonuclease, 3' → 5' specific
tdh Tdh
tfaQ Qin prophage; predicted tail fibre assembly protein
thiL thiamin monophosphate kinase
thrA ThrA
thrB ThrB
thrC threonine synthase
thrL thr operon leader peptide
tktB transketolase II
tolC TolC monomer
tonB TonB energy transducing system - TonB subunit
topA DNA topoisomerase I
tpiA triose phosphate isomerase monomer
tpke11 Tpke11
tpr predicted protamine-like protein
tpx lipid hydroperoxide peroxidase
treA periplasmic trehalase
treF cytoplasmic trehalase
trmA tRNA m5U54 methyltransferase
trmD tRNA m1G37 methyltransferase
trmH tRNA (Gm18) 2'-O-methyltransferase
trpS tryptophanyl-tRNA synthetase
trxA thioredoxin 1
tsaE protein involved in threonylcarbamoyladenosine biosynthesis
tsf protein chain elongation factor EF-Ts
tufA elongation factor Tu
tufB elongation factor Tu
typA protein possibly involved in ribosome structure or function
ubiG UbiG
umpG broad specificity 5'(3')-nucleotidase and polyphosphatase
upp Upp
uppP --
uraA uracil:H+ symporter UraA
uspB predicted universal stress (ethanol tolerance) protein B
uspD stress protein involved in resistance to UV irradiation
uvrA excision nuclease subunit A
uvrC excinuclease ABC, subunit C; repair of UV damage to DNA
uvrD --
uvrY UvrY transcriptional regulator
uxaB altronate oxidoreductase
valS valyl-tRNA synthetase
waaA KDO transferase
waaB UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
waaF ADP-heptose:LPS heptosyltransferase II
waaJ UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase
waaL O-antigen ligase
waaO UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase
waaP lipopolysaccharide core heptose (I) kinase
waaQ lipopolysaccharide core heptosyl transferase III
waaS lipopolysaccharide core biosynthesis protein
waaU lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase
xapA xanthosine phosphorylase
xapB xanthosine:H+ symporter XapB
xapR XapR transcriptional activator
xdhA xanthine dehydrogenase subunit
xdhB xanthine dehydrogenase subunit, FAD-binding domain
xdhC xanthine dehydrogenase, Fe-S subunit
xerC site-specific tyrosine recombinase
xseA exonuclease VII, large subunit
xthA exonuclease III
yacC predicted protein
yadS conserved inner membrane protein
yadV probable pilin chaperone similar to PapD
yafD conserved protein
yafE predicted S-adenosylmethionine-dependent methyltransferase
yafN antitoxin of the YafO-YafN toxin-antitoxin system
yafO ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system
yafP predicted acyltransferase with acyl-CoA N-acyltransferase domain
yaiW surface exposed outer membrane lipoprotein
ybaB conserved DNA-binding protein
ybdL methionine-oxo-acid transaminase, PLP-dependent
ybdZ MbtH-like protein that enhances the catalytic function of EntF
ybeD conserved protein
ybeX predicted ion transport protein
ybeY endoribonuclease involved in maturation of 16S rRNA and ribosome quality control
ybeZ predicted protein with nucleoside triphosphate hydrolase domain
ybfG predicted protein
ybfH predicted protein
ybgA conserved protein
ybjP predicted lipoprotein
ycaR conserved protein
ycdT diguanylate cyclase
ychA predicted transcriptional regulator
ychF ribosome-binding ATPase, inhibitor of catalase activity
ychH stress-induced protein
ychQ predicted transcriptional regulator
yciH translation initiation factor
yciT DNA-binding transcriptional regulator
yciZ hypothetical protein
ycjF conserved inner membrane protein
ycjX conserved protein
yddG aromatic amino acid exporter
ydfN Qin prophage; predicted side tail fibre assembly protein
ydhI predicted inner membrane protein
ydhJ conserved protein
ydhK conserved inner membrane protein
ydhQ conserved protein
yeaR conserved protein
yeaY predicted lipoprotein
yebK predicted DNA-binding transcriptional regulator
yehW YehW
yehX YehX
yehY YehY
yeiL YeiL DNA-binding transcriptional activator
yeiQ predicted dehydrogenase, NAD-dependent
yfcJ predicted transport protein YfcJ
yfeK predicted protein
yfeS conserved protein
yfeX porphyrinogen peroxidase
yfeY predicted outer membrane lipoprotein
yffO CPZ-55 prophage; predicted protein
yffP CPZ-55 prophage; predicted protein
yfgD predicted oxidoreductase
yfgF cyclic di-GMP phosphodiesterase
yfgG predicted protein
ygfA --
yggE conserved protein
yggL predicted protein
yggN predicted protein
yggW predicted oxidoreductase
yghF predicted secretion pathway protein, C-type protein
ygiA predicted protein
ygiB conserved outer membrane protein
ygiC predicted enzyme with ATPase activity
ygiM predicted signal transduction protein (SH3 domain)
yhaH putative cytochrome
yhaV YhaV toxic endonuclease
yhdH acrylyl-CoA reductase
yhdN conserved protein
yhdT conserved inner membrane protein
yhfA conserved protein
yhjG predicted outer membrane biogenesis protein
yhjJ predicted zinc-dependent peptidase
yiaG predicted transcriptional regulator
yiaJ YiaJ DNA-binding transcriptional repressor
yiaK 2,3-diketo-L-gulonate reductase monomer
yiaL conserved protein
yiaM 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit
yiaN 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit
yiaO 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein
yibQ putative nucleoside (IDP) diphosphatase
yicI α-xylosidase
yicJ YicJ GPH transporter
yidQ conserved outer membrane protein
yieE predicted phosphopantetheinyl transferase
yieF chromate reductase monomer
yifL predicted lipoprotein
yigA conserved protein
yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase
yihG predicted endonuclease
yihI GAP-like protein that activates GTPase activity of Der
yihL YihL putative transcriptional regulator
yihM conserved protein
yiiS conserved protein
yjaZ conserved protein
yjbE predicted protein
yjbF predicted lipoprotein
yjbG conserved protein
yjbH predicted porin
yjcC predicted c-di-GMP-specific phosphodiesterase
yjcH conserved inner membrane protein
yjeF NAD(P)HX epimerase / NAD(P)HX dehydratase
yjjP predicted inner membrane structural protein
yjjX ITPase/XTPase
yjjZ predicted protein
ykgR small membrane protein
ymfJ e14 prophage; predicted protein
yneJ predicted DNA-binding transcriptional regulator, LysR-type
yneM small membrane protein
ynfE oxidoreductase subunit
ynfF oxidoreductase subunit
ynfG oxidoreductase, predicted Fe-S subunit
ynfH oxidoreductase, predicted membrane anchor subunit
ynfK predicted dethiobiotin synthetase
yoaC predicted protein
yoaE predicted inner membrane protein
yoaG predicted protein
yobF small protein involved in stress responses
yqiG predicted outer membrane usher protein
yqiH predicted periplasmic pilin chaperone
yqiI protein involved in detoxification of methylglyoxal
yraP lipoprotein
yrbG inner membrane protein YrbG
yrbN small protein
ytfJ conserved protein
ytfK conserved protein
zinT cadmium-induced cadmium binding protein