Escherichia coli str. K-12 substr. MG1655 (Strong Evidences)

All genes
Gene Product description NDA class
accA acetyl-CoA carboxyltransferase, α subunit Basal machinery
accB biotin carboxyl carrier protein Basal machinery
accC AccC Basal machinery
accD acetyl-CoA carboxyltransferase, β subunit Basal machinery
aceA isocitrate lyase monomer Intermodular
aceB malate synthase A Intermodular
aceE subunit of E1p component of pyruvate dehydrogenase complex 1.21
aceF AceF 1.21
aceK AceK Intermodular
acnA aconitate hydratase 1 1.2
acnB bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase Basal machinery
acpP apo-[acyl carrier protein] Basal machinery
acpS AcpS Basal machinery
acrA AcrAB-TolC multidrug efflux system - membrane fusion protein Intermodular
acrB AcrAB-TolC multidrug efflux system - permease subunit Intermodular
acrD AcrAD-TolC multidrug efflux system - permease subunit 1.1
acrR AcrR DNA-binding transcriptional repressor Basal machinery
acs acetyl-CoA synthetase (AMP-forming) Basal machinery
actP -- Basal machinery
ada Ada DNA-binding transcriptional dual regulator 35
adeD cryptic adenine deaminase monomer Basal machinery
adhE AdhE 1.1
adiA Adi 1.1
adiC AdiC 1.1
adiY AdiY DNA-binding transcriptional activator 1.1
adrA predicted diguanylate cyclase 1.1
aer aerotaxis sensor receptor, flavoprotein 1.1
agaA predicted truncated N-acetylgalactosamine-6-phosphate deacetylase 7
agaB galactosamine PTS permease (cryptic) - AgaB subunit 7
agaC galactosamine PTS permease (cryptic) - AgaC subunit 7
agaD galactosamine PTS permease (cryptic) - AgaD subunit 7
agaI predicted galactosamine-6-phosphate isomerase 7
agaR AgaR DNA-binding transcriptional repressor 7
agaS putative tagatose-6-phosphate aldose/ketose isomerase 7
agaV N-acetyl-D-galactosamine PTS permease (cryptic) - AgaV subunit 7
agaW N-acetyl-D-galactosamine PTS permease (cryptic) - AgaW subunit (pseudogene) 7
ahpC alkyl hydroperoxide reductase, AhpC component 1.10
ahpF AhpF component 1.10
aidB AidB 35
alaC glutamate-pyruvate aminotransferase 12
alaS alanyl-tRNA synthetase Basal machinery
aldA AldA 2
aldB -- Basal machinery
alkA 3-methyl-adenine DNA glycosylase II, inducible 35
alkB AlkB repair system for alkylated DNA and RNA 35
allA ureidoglycolate lyase 9
allB allantoinase monomer 9
allR AllR DNA-binding transcriptional repressor 9
allS AllS transcriptional activator 9
alsA D-allose ABC transporter - ATP binding subunit Basal machinery
alsB D-allose ABC transporter - periplasmic binding protein Basal machinery
alsC D-allose ABC transporter - membrane subunit Basal machinery
alsE allulose-6-phosphate 3-epimerase Basal machinery
amiA N-acetylmuramoyl-L-alanine amidase 1 Basal machinery
amiB N-acetylmuramoyl-L-alanine amidase 2 Basal machinery
ampC β-lactamase; penicillin resistance Basal machinery
ansB AnsB Basal machinery
ansP L-asparagine transporter Basal machinery
appY AppY DNA-binding transcriptional activator Basal machinery
apt adenine phosphoribosyltransferase Basal machinery
araA L-arabinose isomerase monomer 11
araB L-ribulokinase monomer 11
araC AraC 11
araD L-ribulose 5-phosphate 4-epimerase monomer 11
araE arabinose:H+ symporter 11
araF arabinose ABC transporter - periplasmic binding protein 11
araG arabinose ABC transporter - ATP binding subunit 11
araH arabinose ABC transporter - membrane subunit 11
araJ putative transport protein 11
arcA ArcA transcriptional dual regulator Global regulator
arfA ribosome rescue factor Basal machinery
argA ArgA 1.16
argB acetylglutamate kinase monomer 1.16
argC N-acetylglutamylphosphate reductase 1.16
argD ArgD 1.16
argE ArgE 1.16
argF ArgF 1.16
argG ArgG 1.16
argH argininosuccinate lyase 1.16
argI ArgI 1.16
argO arginine export protein 2
argP ArgP transcriptional activator 2
argR ArgR 1.16
ariR regulator of acid resistance, influenced by indole 29
aroA 3-phosphoshikimate-1-carboxyvinyltransferase Basal machinery
aroB 3-dehydroquinate synthase Basal machinery
aroF AroF 1.26
aroG AroG Intermodular
aroH AroH 1.24
aroK shikimate kinase I Basal machinery
aroL shikimate kinase II Intermodular
aroM conserved protein Intermodular
aroP aromatic amino acid:H+ symporter AroP 1.26
arsB ArsB 55
arsC arsenate reductase 55
arsR ArsR 55
artI periplasmic binding protein ArtI 1.16
artJ L-arginine ABC transporter - periplasmic binding protein 1.16
artM L-arginine ABC transporter - membrane subunit 1.16
artP L-arginine ABC transporter - ATP binding subunit 1.16
artQ L-arginine ABC transporter - membrane subunit 1.16
ascB 6-phospho-β-glucosidase; cryptic 23
ascF AscF 23
ascG AscG DNA-binding transcriptional repressor 23
aslB predicted anaerobic sulfatase maturation enzyme 1.1
asnA AsnA Basal machinery
asnC AsnC Basal machinery
aspA AspA Basal machinery
asr acid shock protein 1.1
astA arginine succinyltransferase Intermodular
astB -- Intermodular
astC succinylornithine transaminase Intermodular
astD aldehyde dehydrogenase Intermodular
astE succinylglutamate desuccinylase Intermodular
atoA acetyl-CoA:acetoacetyl-CoA transferase, β subunit 32
atoB AtoB 32
atoC AtoC transcriptional activator; Az protein inhibitor of ODC 32
atoD acetyl-CoA:acetoacetyl-CoA transferase, α subunit 32
atoE predicted short chain fatty acid transporter 32
atpA ATP synthase F1 complex - alpha subunit Basal machinery
atpB ATP synthase F0 complex - a subunit Basal machinery
atpC ATP synthase F1 complex - epsilon subunit Basal machinery
atpD ATP synthase F1 complex - beta subunit Basal machinery
atpE -- Basal machinery
atpF ATP synthase F0 complex - b subunit Basal machinery
atpG ATP synthase F1 complex - gamma subunit Basal machinery
atpH ATP synthase F1 complex - delta subunit Basal machinery
atpI AtpI Basal machinery
azoR NADH:quinone oxidoreductase, FMN-dependent Basal machinery
azuC small membrane protein Basal machinery
b0201 -- Basal machinery
b0202 -- Basal machinery
b0203 -- Basal machinery
b0204 -- Basal machinery
b0205 -- Basal machinery
b0971 -- Basal machinery
b1016 -- 1.1
b1230 -- Basal machinery
b1231 -- Basal machinery
b1665 -- Basal machinery
b1666 -- Basal machinery
b1954 -- Basal machinery
b2083 -- 1.1
b2401 -- Basal machinery
b2402 -- Basal machinery
b2403 -- Basal machinery
b2404 -- Basal machinery
b2588 -- Basal machinery
b2589 -- Basal machinery
b2590 -- Basal machinery
b2591 -- Basal machinery
b2814 -- Basal machinery
b2815 -- Basal machinery
b2816 -- Basal machinery
b2911 -- Basal machinery
b3123 -- Basal machinery
b3171 -- 1.16
b3174 -- Basal machinery
b3272 -- Basal machinery
b3273 -- Basal machinery
b3274 -- Basal machinery
b3275 -- Basal machinery
b3276 -- Basal machinery
b3277 -- Basal machinery
b3278 -- Basal machinery
b3756 -- Basal machinery
b3757 -- Basal machinery
b3758 -- Basal machinery
b3759 -- Basal machinery
b3796 -- Basal machinery
b3797 -- Basal machinery
b3798 -- Basal machinery
b3799 -- Basal machinery
b3851 -- Basal machinery
b3852 -- Basal machinery
b3853 -- Basal machinery
b3854 -- Basal machinery
b3855 -- Basal machinery
b3864 -- Basal machinery
b3968 -- Basal machinery
b3969 -- Basal machinery
b3970 -- Basal machinery
b3971 -- Basal machinery
b3976 -- Basal machinery
b3977 -- Basal machinery
b3978 -- Basal machinery
b3979 -- Basal machinery
b4007 -- Basal machinery
b4008 -- Basal machinery
b4009 -- Basal machinery
b4010 -- Basal machinery
b4408 -- Basal machinery
b4414 -- Basal machinery
b4417 -- Basal machinery
b4426 -- Basal machinery
b4427 -- Basal machinery
b4431 -- 1.1
b4436 -- Basal machinery
b4437 -- Basal machinery
b4438 -- Basal machinery
b4439 -- Intermodular
b4441 -- 64
b4443 -- 31
b4447 -- Basal machinery
b4451 -- Basal machinery
b4452 -- Basal machinery
b4454 -- Basal machinery
b4456 -- Basal machinery
b4458 -- 1.10
b4577 -- 12
b4597 -- Basal machinery
b4608 -- Basal machinery
b4609 -- Basal machinery
b4611 -- Basal machinery
b4616 -- Basal machinery
b4624 -- Basal machinery
b4625 -- Basal machinery
b4698 -- Basal machinery
b4699 -- Basal machinery
b4707 -- Basal machinery
baeR BaeR transcriptional regulator 1.1
baeS BaeS sensory histidine kinase 1.1
bamA Outer Membrane Protein Assembly Complex - BamA subunit Basal machinery
bamB Outer Membrane Protein Assembly Complex - BamB subunit Basal machinery
bamC Outer Membrane Protein Assembly Complex - BamC subunit Basal machinery
bamD Outer Membrane Protein Assembly Complex - BamD subunit Basal machinery
bamE Outer Membrane Protein Assembly Complex - BamE subunit Basal machinery
basR BasR transcriptional regulator 1.1
bcp thiol peroxidase Basal machinery
bdm biofilm-dependent modulation protein 1.1
bepA chaperone/protease involved in the maintenance of OM integrity Basal machinery
betA choline dehydrogenase Basal machinery
betB BetB Basal machinery
betI BetI DNA-binding transcriptional repressor Basal machinery
betT choline:H+ symporter Basal machinery
bfr bacterioferritin monomer Basal machinery
bglB 6-phospho-β-glucosidase B; cryptic 1.1
bglF BglF 1.1
bglG BglG transcriptional antiterminator (monomer) 1.1
bglJ BglJ DNA-binding transcriptional regulator 1.1
bhsA outer membrane protein involved in copper permeability, stress resistance and biofilm formation 62
bioA adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer 25
bioB biotin synthase monomer 25
bioC malonyl-[acp] methyltransferase 25
bioD1 -- 25
bioF 8-amino-7-oxononanoate synthase monomer 25
birA bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor 25
blc Blc outer membrane lipoprotein (lipocalin) Basal machinery
bluR BluR DNA-binding transcriptional repressor 29
bolA BolA DNA-binding transcriptional dual regulator 1.1
borD bacteriophage lambda Bor protein homolog 1.1
bssS regulator of biofilm formation Basal machinery
btuB vitamin B12 / E colicin / bacteriophage BF23 outer membrane porin BtuB 1.1
btuF vitamin B12 ABC transporter - periplasmic binding protein Basal machinery
cadA CadA 1.1
cadB cadaverine:H+ symporter/lysine:cadaverine antiporter 1.1
cadC CadC DNA-binding transcriptional activator 1.1
caiA crotonobetainyl-CoA reductase 8
caiB CaiB monomer 8
caiC carnitine-CoA ligase 8
caiD crotonobetainyl-CoA hydratase 8
caiE predicted acyl transferase 8
caiF CaiF 8
caiT -- 8
can carbonic anhydrase 2 monomer Basal machinery
carA carbamoyl phosphate synthetase, α chain Intermodular
carB carbamoyl phosphate synthetase, β chain Intermodular
cas1 multifunctional nuclease 1.1
cas2 predicted endoribonuclease 1.1
casA Cascade subunit A 1.1
casB Cascade subunit B 1.1
casC Cascade subunit C 1.1
casD Cascade subunit D 1.1
casE crRNA endonuclease 1.1
cbl Cbl DNA-binding transcriptional activator 5
cbpA CbpA monomer Basal machinery
cbpM chaperone modulator protein CbpM Basal machinery
cca fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase Basal machinery
ccmA protoheme IX ABC transporter - ATP binding subunit Intermodular
ccmB protoheme IX ABC transporter - membrane subunit CcmB Intermodular
ccmC protoheme IX ABC transporter - membrane subunit CcmC Intermodular
ccmD protoheme IX ABC transporter - membrane subunit CcmD Intermodular
ccmE membrane anchored periplasmic heme chaperone CcmE Intermodular
ccmF cytochrome c-type biogenesis protein Intermodular
ccmH CcmH Intermodular
cdd Cdd 1.33
cdsA CDP-diglyceride synthetase Basal machinery
cfa cyclopropane fatty acyl phospholipid synthase Basal machinery
chbA chitobiose PTS permease - ChbA subunit 1.5
chbB chitobiose PTS permease - ChbB subunit 1.5
chbC chitobiose PTS permease - ChbC subunit 1.5
chbF monoacetylchitobiose-6-phosphate hydrolase 1.5
chbG chito-oligosaccharide mono-deacetylase 1.5
chbR ChbR DNA-binding transcriptional dual regulator 1.5
cheA CheA(S) 1.1
cheB CheB 1.1
cheR chemotaxis protein methyltransferase/chemotaxis protein methyltransferase/chemotaxis protein methyltransferase/chemotaxis protein methyltransferase/chemotaxis protein methyltransferase 1.1
cheW CheW 1.1
cheY chemotaxis regulator transmitting signal to flagellar motor component 1.1
cheZ CheZ 1.1
chiA endochitinase Basal machinery
chiX MicM Basal machinery
cirA outer membrane receptor involved in uptake of ferric dihyroxybenzoylserine Basal machinery
citC citrate lyase synthetase 3
citD citrate lyase, acyl carrier γ subunit 3
citE citrate lyase, citryl-ACP lyase β subunit 3
citF citrate lyase, citrate-ACP transferase α subunit 3
citG triphosphoribosyl-dephospho-CoA synthase 3
citX apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 3
clpA ClpA Basal machinery
clpB ClpB chaperone Basal machinery
clpP ClpP Basal machinery
clpX ClpX Basal machinery
cmk cytidylate kinase Basal machinery
coaD pantetheine-phosphate adenylyltransferase monomer Basal machinery
cobS cobalamin 5'-phosphate synthase Basal machinery
cobT CobT Basal machinery
cobU CobU Basal machinery
codA -- 54
codB cytosine transporter 54
comR ComR DNA-binding transcriptional repressor 62
copA Cu+ efflux ATPase 44
cpdB 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase Basal machinery
cpxA CpxA sensory histidine kinase 1.1
cpxP regulator of the Cpx response and possible chaperone involved in resistance to extracytoplasmic stress 1.1
cpxR CpxR transcriptional dual regulator 1.1
cra Cra DNA-binding transcriptional dual regulator 1.1
creA conserved protein Basal machinery
creB CreB transcriptional regulator 57
creC CreC Basal machinery
creD predicted inner membrane protein 57
crp CRP transcriptional dual regulator Global regulator
crr Enzyme IIAGlc; Crr Intermodular
csgA curlin, major subunit 1.1
csgB curlin, minor subunit 1.1
csgC putative curli production protein 1.1
csgD CsgD DNA-binding transcriptional dual regulator 1.1
csgE curli transport specificity factor 1.1
csgF curli assembly component 1.1
csgG curli secretion channel 1.1
csiD predicted protein Basal machinery
csiE stationary phase inducible protein Basal machinery
cspA CspA DNA-binding transcriptional activator Basal machinery
cspC stress protein, member of the CspA family Basal machinery
cspD DNA replication inhibitor 41
cspE transcription antiterminator and regulator of RNA stability 42
cspI Qin prophage; cold shock protein 1.1
csrA carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism Basal machinery
cstA peptide transporter induced by carbon starvation Basal machinery
cueO multicopper oxidase with role in copper homeostasis 44
cueR CueR transcriptional dual regulator 44
cusA copper / silver efflux system - membrane subunit 28
cusB copper / silver efflux system - membrane fusion protein 28
cusC copper / silver efflux system - outer membrane porin 28
cusF copper / silver efflux system - periplasmic binding protein and metallochaperone 28
cusR CusR 28
cusS CusS sensory histidine kinase 28
cutA copper binding protein CutA Basal machinery
cutC copper homeostasis protein Basal machinery
cvpA membrane protein required for colicin V production 1.11
cyaA adenylate cyclase Basal machinery
cyaY frataxin, iron-binding and oxidizing protein Basal machinery
cydA cytochrome bd-I terminal oxidase subunit I Intermodular
cydB cytochrome bd-I terminal oxidase subunit II Intermodular
cydC glutathione / L-cysteine efflux transporter - CydC subunit Basal machinery
cydD glutathione / L-cysteine efflux transporter - CydD subunit Basal machinery
cynR CynR DNA-binding transcriptional repressor 36
cynS cyanase monomer 36
cynT carbonic anhydrase monomer 36
cynX cyanate transporter 36
cyoA cytochrome bo terminal oxidase subunit II 1.21
cyoB cytochrome bo terminal oxidase subunit I 1.21
cyoC cytochrome bo terminal oxidase subunit III 1.21
cyoD cytochrome bo terminal oxidase subunit IV 1.21
cyoE heme O synthase 1.21
cysA sulfate / thiosulfate ABC transporter - ATP binding subunit 5
cysB CysB 5
cysC CysC Basal machinery
cysD sulfate adenylyltransferase, CysD subunit Basal machinery
cysG CysG 1.12
cysH CysH Basal machinery
cysI sulfite reductase, hemoprotein subunit Basal machinery
cysJ sulfite reductase, flavoprotein subunit Basal machinery
cysK O-acetylserine sulfhydrylase A 5
cysM CysM 5
cysN sulfate adenylyltransferase, CysN subunit Basal machinery
cysP sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP 5
cysU sulfate / thiosulfate ABC transporter - membrane subunit 5
cysW sulfate / thiosulfate ABC transporter - membrane subunit 5
cytR CytR 1.33
dacA D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 Basal machinery
dadA D-amino acid dehydrogenase Basal machinery
dadX -- Basal machinery
dam DNA adenine methyltransferase Basal machinery
damX cell division protein DamX Basal machinery
dapA 4-hydroxy-tetrahydrodipicolinate synthase Basal machinery
dapB 4-hydroxy-tetrahydrodipicolinate reductase 2
dapD tetrahydrodipicolinate succinylase 2
dapF -- Basal machinery
dctA C4 dicarboxylate / orotate:H+ symporter 3
dctR predicted DNA-binding transcriptional regulator 1.1
dcuA dicarboxylate transporter DcuA Basal machinery
dcuB dicarboxylate transporter DcuB 3
dcuR DcuR transcriptional activator 3
dcuS DcuS sensory histidine kinase Basal machinery
ddlB D-alanine-D-alanine ligase B 1.21
deaD DeaD, DEAD-box RNA helicase Basal machinery
def peptide deformylase Basal machinery
degP DegP 1.1
deoA DeoA Intermodular
deoB phosphopentomutase Intermodular
deoC deoxyribose-phosphate aldolase Intermodular
deoD purine nucleoside phosphorylase Intermodular
deoR DeoR DNA-binding transcriptional repressor 1.8
der 50S ribosomal subunit stability factor Basal machinery
dgcZ diguanylate cyclase 1.1
dgkA DgkA 1.1
dinF DinF MATE Transporter 4
dinG ATP-dependent helicase 4
dinI DNA damage-inducible protein I 4
dinJ DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor 42
dkgA methylglyoxal reductase/isobutyraldehyde reductase/β-keto ester reductase/2,5-diketo-D-gluconate reductase 46
dksA RNA polymerase-binding transcription factor DksA Basal machinery
dld D-lactate dehydrogenase Basal machinery
dmsA dimethyl sulfoxide reductase, chain A 1.15
dmsB dimethyl sulfoxide reductase, chain B 1.15
dmsC dimethyl sulfoxide reductase, chain C 1.15
dmsD DMS reductase maturation protein Basal machinery
dnaA chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator 2
dnaE DNA polymerase III, α subunit Basal machinery
dnaG DNA primase 4
dnaJ chaperone protein DnaJ Basal machinery
dnaK chaperone protein DnaK Basal machinery
dnaN DnaN 2
dpiA DpiA 3
dpiB DpiB sensory histidine kinase 3
dppA dipeptide ABC transporter - periplasmic binding protein Basal machinery
dppB dipeptide ABC transporter - putative membrane subunit Basal machinery
dppC dipeptide ABC transporter - putative membrane subunit Basal machinery
dppD dipeptide ABC transporter - putative ATP binding subunit Basal machinery
dppF dipeptide ABC transporter - putative ABC binding subunit Basal machinery
dps stationary phase nucleoid protein that sequesters iron and protects DNA from damage Basal machinery
dsbA protein disulfide oxidoreductase - DsbAreduced 1.1
dsbC DsbC monomer Basal machinery
dsbE -- Intermodular
dsbG DsbGreduced 1.10
dsdA D-serine ammonia-lyase Basal machinery
dsdX D-serine transporter Basal machinery
dtpA tripeptide / dipeptide:H+ symporter DtpA 1.1
dusB tRNA-dihydrouridine synthase B Basal machinery
ecnB entericidin B Basal machinery
ecpA E. coli common pilus - major subunit; cryptic 1.1
ecpR MatA DNA-binding transcriptional dual regulator 1.1
eda Eda Intermodular
edd phosphogluconate dehydratase Intermodular
efeU_2 -- 1.1
emrA EmrAB-TolC multidrug efflux transport system - membrane fusion protein 53
emrB EmrAB-TolC multidrug efflux transport system - membrane subunit 53
emrK EmrKY-TolC multidrug efflux transport system - membrane fusion protein 1.1
emrY EmrKY putative multidrug efflux transporter - membrane subunit 1.1
eno Eno 1.1
entA EntA Basal machinery
entB EntB monomer Basal machinery
entC isochorismate synthase 1 Basal machinery
entD phosphopantetheinyl transferase/phosphopantetheinyl transferase Basal machinery
entE EntE Basal machinery
entF apo-serine activating enzyme Basal machinery
entH proofreading thioesterase in enterobactin biosynthesis Basal machinery
entS enterobactin efflux transporter EntS Basal machinery
envC EnvC divisome associated factor, activator of peptidoglycan hydrolases Basal machinery
envR EnvR DNA-binding transcriptional repressor 1.25
envZ EnvZ Basal machinery
epd Epd 1.1
eptB phosphoethanolamine transferase EptB Basal machinery
era GTP-binding protein Basal machinery
erpA essential respiratory protein A 1.20
essD DLP12 prophage; predicted phage lysis protein Basal machinery
evgA EvgA transcriptional regulator 1.1
evgS EvgS sensory histidine kinase 1.1
exbB TonB energy transducing system - ExbB subunit Basal machinery
exbD tonB energy transducing system - ExbD subunit Basal machinery
exuT hexuronate transporter 3
fabA FabA 1.28
fabB FabB Intermodular
fabF FabF Basal machinery
fabR FabR DNA-binding transcriptional repressor 1.28
fabZ FabZ Basal machinery
fadA 3-ketoacyl-CoA thiolase Basal machinery
fadB dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase Basal machinery
fadD FadD 1.3
fadE acyl-CoA dehydrogenase 1.3
fadH 2,4-dienoyl-CoA reductase 1.3
fadI FadI monomer 1.3
fadJ FadJ monomer 1.3
fadL long-chain fatty acid outer membrane porin; bacteriophage T2 receptor Intermodular
fadR FadR DNA-binding transcriptional dual regulator 1.3
fbaA fructose bisphosphate aldolase monomer 1.1
fbaB fructose bisphosphate aldolase monomer Basal machinery
fdhE formate dehydrogenase formation protein Basal machinery
fdhF formate dehydrogenase H 1.19
fdnG formate dehydrogenase N, α subunit 1.12
fdnH formate dehydrogenase N, β subunit 1.12
fdnI formate dehydrogenase N, γ subunit 1.12
fdx reduced ferredoxin Basal machinery
fecA ferric citrate outer membrane porin FecA 20
fecB ferric dicitrate ABC transporter - periplasmic binding protein 20
fecC ferric dicitrate ABC transporter - membrane subunit 20
fecD ferric dicitrate ABC transporter - membrane subunit 20
fecE ferric dicitrate ABC transporter - ATP binding subunit 20
fecI RNA polymerase, sigma 19 factor 20
fecR regulator for fec operon, periplasmic Basal machinery
fepA ferric enterobactin / colicin B / colicin D outer membrane porin FepA Basal machinery
fepB ferric enterobactin ABC transporter - periplasmic binding protein 1.1
fepC ferric enterobactin ABC transporter - ATP binding subunit Basal machinery
fepD ferric enterobactin ABC transporter - membrane subunit Basal machinery
fepE ferric enterobactin (enterochelin) transport Basal machinery
fepG ferric enterobactin ABC transporter - membrane subunit Basal machinery
fes enterochelin esterase Basal machinery
fetA ABC transporter with a role in iron homeostasis - ATP-binding subunit Basal machinery
fetB ABC transporter with a role in iron homeostasis - membrane subunit Basal machinery
fhlA FhlA transcriptional activator 1.19
fhuA ferrichrome / phage / antibiotic outer membrane porin FhuA Basal machinery
fhuB iron (III) hydroxamate ABC transporter - membrane subunit Basal machinery
fhuC iron (III) hydroxamate ABC transporter - ATP binding subunit Basal machinery
fhuD iron (III) hydroxamate ABC transporter - periplasmic binding protein Basal machinery
fhuF hydroxamate siderophore iron reductase 1.10
fieF FieF Basal machinery
fimA major type 1 subunit fimbrin (pilin) Basal machinery
fimB regulator for fimA Intermodular
fimC periplasmic chaperone, required for type 1 fimbriae Basal machinery
fimD FimD monomer Basal machinery
fimE regulator for fimA 1.1
fimF fimbrial morphology Basal machinery
fimG fimbrial morphology Basal machinery
fimH minor fimbrial subunit, D-mannose specific adhesin Basal machinery
fimI fimbrial protein Basal machinery
fis Fis Global regulator
fixA predicted elecron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain 8
fixB predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like 8
fixC flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism 8
fixX putative ferredoxin possibly involved in anaerobic carnitine metabolism 8
fkpA peptidyl-prolyl cis-trans isomerase; in protein folding Basal machinery
fkpB peptidyl-prolyl cis-trans isomerase Basal machinery
fldA flavodoxin 1 1.2
fldB flavodoxin 2 Basal machinery
flgB flagellar basal-body rod protein FlgB 1.1
flgC flagellar basal-body rod protein FlgC 1.1
flgD flagellar biosynthesis, initiation of hook assembly 1.1
flgE flagellar hook protein FlgE 1.1
flgF flagellar basal-body rod protein FlgF 1.1
flgG flagellar basal-body rod protein FlgG 1.1
flgH flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein 1.1
flgI flagellar P-ring protein FlgI 1.1
flgJ FlgJ 1.1
flhA flagellar biosynthesis protein FlhA 1.1
flhB flagellar biosynthesis protein FlhB 1.1
flhC FlhC 1.1
flhD FlhD 1.1
flhE flagellar protein 1.1
fliA RNA polymerase, sigma 28 (sigma F) factor 1.1
fliC flagellar biosynthesis; flagellin, filament structural protein 1.1
fliD flagellar cap protein FliD; filament capping protein; enables filament assembly 1.1
fliE flagellar basal-body protein FliE 1.1
fliF flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein 1.1
fliG flagellar motor switch protein FliG 1.1
fliH flagellar biosynthesis protein FliH 1.1
fliI flagellum-specific ATP synthase FliI 1.1
fliJ flagellar biosynthesis protein FliJ 1.1
fliK flagellar hook-length control protein FliK 1.1
fliL flagellar biosynthesis 1.1
fliM flagellar motor switch protein FliM 1.1
fliN flagellar motor switch protein FliN 1.1
fliO flagellar biosynthesis protein FliO 1.1
fliP flagellar biosynthesis protein FliP 1.1
fliQ flagellar biosynthesis protein FliQ 1.1
fliR flagellar biosynthesis protein FliR 1.1
fliS flagellar biosynthesis protein FliS 1.1
fliT flagellar biosynthesis protein FliT 1.1
fliY periplasmic cystine-binding protein; member of extracellular bacterial solute-binding protein family III 1.1
fliZ FliZ DNA-binding transcriptional regulator 1.1
flu CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter 1.10
fmt 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase Basal machinery
fnr FNR Global regulator
focA -- Basal machinery
focB FocB formate FNT transporter Basal machinery
folA dihydrofolate reductase 1.26
folE GTP cyclohydrolase I monomer 1.4
folK 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase Basal machinery
fpr flavodoxin NADP+ reductase 1.2
frc formyl-CoA transferase monomer 1.1
frdA fumarate reductase flavoprotein 3
frdB fumarate reductase iron-sulfur protein 3
frdC fumarate reductase membrane protein 3
frdD fumarate reductase membrane protein 3
frsA fermentation/respiration switch protein Basal machinery
ftnA ferritin iron storage protein Basal machinery
ftnB predicted ferritin-like protein 1.1
ftsA essential cell division protein FtsA Intermodular
ftsH ATP-dependent zinc metalloprotease FtsH Basal machinery
ftsI essential cell division protein FtsI; penicillin-binding protein 3 1.21
ftsK essential cell division protein FtsK 4
ftsL essential cell division protein FtsL 1.21
ftsQ essential cell division protein FtsQ Intermodular
ftsW essential cell division protein FtsW; lipid II flippase 1.21
ftsZ essential cell division protein FtsZ Intermodular
fucI -- Basal machinery
fucK L-fuculokinase Basal machinery
fucP fucose:H+ symporter Basal machinery
fucR FucR transcriptional activator Basal machinery
fucU L-fucose mutarotase Basal machinery
fumA fumarase A monomer Basal machinery
fumB fumarase B monomer 3
fumC fumarase C monomer 1.2
fur Fur Global regulator
fusA elongation factor G Basal machinery
fxsA inner membrane protein; overproduction inhibits F exclusion of bacteriophage T7 Basal machinery
gabD -- Basal machinery
gabP 4-aminobutyrate:H+ symporter Basal machinery
gabT 4-aminobutyrate aminotransferase monomer Basal machinery
gadA glutamate decarboxylase A subunit 1.1
gadB glutamate decarboxylase B subunit 1.1
gadC glutamic acid:4-aminobutyrate antiporter 1.1
gadE GadE DNA-binding transcriptional activator 1.1
gadW GadW DNA-binding transcriptional dual regulator 1.1
gadX GadX DNA-binding transcriptional dual regulator 1.1
galE UDP-glucose 4-epimerase monomer Intermodular
galK galactokinase Intermodular
galM galactose-1-epimerase Intermodular
galP galactose:H+ symporter Intermodular
galR GalR DNA-binding transcriptional dual regulator 1.22
galS GalS DNA-binding transcriptional dual regulator 1.23
galT galactose-1-phosphate uridylyltransferase Intermodular
gapA glyceraldehyde 3-phosphate dehydrogenase-A monomer 1.1
garK glycerate kinase I Basal machinery
garL -- Basal machinery
garP galactarate / glucarate / glycerate transporter GarP Basal machinery
garR tartronate semialdehyde reductase Basal machinery
gatA galactitol PTS permease - GatA subunit Basal machinery
gatB galactitol PTS permease - GatB subunit Basal machinery
gatC galactitol PTS permease - GatC subunit Basal machinery
gatD galactitol-1-phosphate dehydrogenase Basal machinery
gatY GatY Basal machinery
gatZ -- Basal machinery
gcd quinoprotein glucose dehydrogenase Basal machinery
gcl glyoxylate carboligase 9
gcvA GcvA DNA-binding transcriptional dual regulator 31
gcvH glycine cleavage system H protein 31
gcvP glycine decarboxylase 31
gcvR GcvR predicted transcriptional regulator Basal machinery
gcvT aminomethyltransferase 31
gdhA GdhA 2
glcA glycolate / lactate:H+ symporter Intermodular
glcB malate synthase G Intermodular
glcC GlcC transcriptional dual regulator 1.32
glcD glycolate oxidase, predicted FAD-linked subunit Intermodular
glcE glycolate oxidase, predicted FAD-binding subunit Intermodular
glcF glycolate oxidase, predicted iron-sulfur subunit Intermodular
glcG conserved protein Intermodular
glgA glycogen synthase Basal machinery
glgB 1,4-α-glucan branching enzyme Basal machinery
glgC GlgC Basal machinery
glgP GlgP Basal machinery
glgS surface composition regulator Basal machinery
glgX glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase Basal machinery
glk glucokinase/glucokinase Basal machinery
glmS GlmS 1.5
glmU GlmU 1.5
glnA GlnA 1.30
glnB PII Basal machinery
glnG NtrC transcriptional dual regulator 1.30
glnH glutamine ABC transporter - periplasmic binding protein 1.30
glnL NtrB 1.30
glnP glutamine ABC transporter - membrane subunit 1.30
glnQ glutamine ABC transporter - ATP binding subunit 1.30
glpA anaerobic glycerol-3-phosphate dehydrogenase subunit A 10
glpB anaerobic glycerol-3-phosphate dehydrogenase subunit B 10
glpC anaerobic glycerol-3-phosphate dehydrogenase subunit C 10
glpD GlpD 10
glpE -- Basal machinery
glpF GlpF 10
glpG intramembrane serine protease GlpG Basal machinery
glpK GlpK 10
glpQ GlpQ 10
glpR GlpR DNA-binding transcriptional repressor 10
glpT glycerol-3-phosphate:phosphate antiporter 10
glpX fructose 1,6-bisphosphatase II 10
glrK GlrK sensory histidine kinase Basal machinery
glrR GlrR DNA-binding transcriptional activator 64
gltA citrate synthase monomer Basal machinery
gltB glutamate synthase, large subunit Intermodular
gltD glutamate synthase, small subunit Intermodular
gltF periplasmic protein Intermodular
gltI glutamate / aspartate ABC transporter - periplasmic binding protein 1.1
gltJ glutamate / aspartate ABC transporter - membrane subunit 1.1
gltK glutamate / aspartate ABC transporter - membrane subunit 1.1
gltL glutamate / aspartate ABC transporter - ATP binding subunit 1.1
gltX glutamyl-tRNA synthetase Basal machinery
gluQ glutamyl-Q tRNAAsp synthetase Basal machinery
glxK glycerate kinase II 9
glxR tartronate semialdehyde reductase 2 9
glyA serine hydroxymethyltransferase Intermodular
glyQ glycyl-tRNA synthetase, α subunit Basal machinery
glyS glycyl-tRNA synthetase, β subunit Basal machinery
gmk guanylate kinase Basal machinery
gmr cyclic di-GMP phosphodiesterase 1.1
gnd Gnd Basal machinery
gntK GntK 1.18
gntP gluconate / fructuronate transporter GntP 39
gntR GntR DNA-binding transcriptional repressor 1.18
gntT gluconate transporter GntT 1.18
gntU gluconate transporter GntU 1.18
gph phosphoglycolate phosphatase Basal machinery
gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase monomer Basal machinery
gpmI -- Basal machinery
grcA stress-induced alternate pyruvate formate-lyase subunit Basal machinery
greA transcription elongation factor GreA Basal machinery
groL GroEL chaperonin Basal machinery
groS GroES cochaperonin Basal machinery
grpE nucleotide exchange factor GrpE Basal machinery
grxA reduced glutaredoxin 1 1.10
gspA general secretory pathway component, cryptic Basal machinery
gspB calcium-binding protein required for initiation of chromosome replication Basal machinery
gspC putative protein secretion protein for export Basal machinery
gspD putative protein secretion protein for export Basal machinery
gspE putative protein secretion protein for export Basal machinery
gspF putative protein secretion protein for export Basal machinery
gspG putative protein secretion protein for export Basal machinery
gspH putative protein secretion protein for export Basal machinery
gspI putative protein secretion protein for export Basal machinery
gspJ putative protein secretion protein for export Basal machinery
gspK putative protein secretion protein for export Basal machinery
gspL putative protein secretion protein for export Basal machinery
gspM putative protein secretion protein Basal machinery
gspO leader peptidase, integral membrane protein Basal machinery
guaA GMP synthetase 2
guaB GuaB 2
gutM GutM DNA-binding transcriptional activator Basal machinery
gutQ D-arabinose 5-phosphate isomerase Basal machinery
gyrA DNA gyrase, subunit A Basal machinery
gyrB DNA gyrase, subunit B Basal machinery
hcaB 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 26
hcaC 3-phenylpropionate dioxygenase, predicted ferredoxin subunit 26
hcaD 3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit 26
hcaE 3-phenylpropionate dioxygenase, α subunit 26
hcaF 3-phenylpropionate dioxygenase, β subunit 26
hcaR HcaR transcriptional dual regulator 26
hchA glyoxalase III, Hsp31 molecular chaperone Basal machinery
hcp hybrid-cluster protein Intermodular
hcr NADH oxidoreductase Intermodular
hdeA acid-resistance protein, possible chaperone Intermodular
hdeB acid stress chaperone Intermodular
hdeD acid-resistance membrane protein 1.1
hdfR HdfR DNA-binding transcriptional dual regulator 1.1
hemA -- Basal machinery
hemF coproporphyrinogen III oxidase Basal machinery
hemH ferrochelatase 1.10
hemL glutamate-1-semialdehyde aminotransferase 1.1
hemN coproporphyrinogen III dehydrogenase Basal machinery
hflC regulator of FtsH protease Basal machinery
hflD lysogenization regulator 1.11
hflK regulator of FtsH protease Basal machinery
hflX GTPase associated with the 50S subunit of the ribosome Basal machinery
hfq RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins Basal machinery
hha haemolysin expression modulating protein 1.1
hicA toxin of the HicA-HicB toxin-antitoxin system Basal machinery
hicB antitoxin of the HicA-HicB toxin-antitoxin system Basal machinery
higA antitoxin of the HigB-HigA toxin-antitoxin system Basal machinery
higB translation-dependent mRNA interferase, toxin of the HigB-HigA toxin-antitoxin system Basal machinery
hipA serine/threonine kinase HipA 65
hipB HipB 65
hisA N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase Basal machinery
hisB -- Basal machinery
hisF imidazole glycerol phosphate synthase, HisF subunit Basal machinery
hisH imidazole glycerol phosphate synthase, HisH subunit Basal machinery
hisI phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase Basal machinery
hisJ histidine ABC transporter - periplasmic binding protein 1.16
hisM lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit 1.16
hisP lysine / arginine / ornithine ABC transporter / histidine ABC transporter - ATP binding subunit 1.16
hisQ lysine / arginine / ornithine ABC transporter / histidine ABC transporter - membrane subunit 1.16
hisS histidyl-tRNA synthetase Basal machinery
hldD -- Basal machinery
hlyE hemolysin E 68
hmp nitric oxide dioxygenase 1.4
hns H-NS DNA-binding transcriptional dual regulator Global regulator
hofB protein involved in plasmid replication Basal machinery
hofC protein transport protein HofC Basal machinery
hofM protein involved in utilization of DNA as a carbon source Basal machinery
hofN protein involved in utilization of DNA as a carbon source Basal machinery
hofO protein involved in utilization of DNA as a carbon source Basal machinery
hofP protein involved in utilization of DNA as a carbon source Basal machinery
hokD Qin prophage; small toxic polypeptide 38
holC DNA polymerase III, χ subunit Basal machinery
hpf hibernation promoting factor Basal machinery
hpt hypoxanthine-guanine phosphoribosyltransferase Basal machinery
hrsA -- 50
hscA chaperone for [Fe-S] cluster biosynthesis Basal machinery
hscB co-chaperone for [Fe-S] cluster biosynthesis Basal machinery
hslJ heat shock protein HslJ 5
hslO molecular chaperone Hsp33 Basal machinery
hslR heat shock protein Hsp15 involved in ribosome recycling Basal machinery
hslU ATPase component of the HslVU protease Basal machinery
hslV peptidase component of the HslVU protease Basal machinery
htgA predicted DNA-binding transcriptional regulator Basal machinery
htpG HtpG monomer 23
htpX heat shock protein, integral membrane protein Basal machinery
htrE putative outer membrane usher protein Basal machinery
hupA transcriptional dual regulator HU-α (HU-2) 1.34
hupB transcriptional dual regulator HU-β, NS1 (HU-1) 1.34
hyaA hydrogenase 1, small subunit 1.20
hyaB hydrogenase 1, large subunit 1.20
hyaC hydrogenase 1, b-type cytochrome subunit 1.20
hyaD protein involved in processing of HyaA and HyaB proteins 1.20
hyaE protein involved in quality control of HyaA 1.20
hyaF protein involved in nickel incorporation into hydrogenase 1 proteins 1.20
hybA hydrogenase 2 4Fe-4S ferredoxin-type component Basal machinery
hybB predicted hydrogenase 2 cytochrome b type component Basal machinery
hybC hydrogenase 2, large subunit Basal machinery
hybD predicted maturation peptidase for hydrogenase 2 Basal machinery
hybE hydrogenase 2-specific chaperone Basal machinery
hybF protein involved with the maturation of hydrogenases 1 and 2 Basal machinery
hybG hydrogenase 2 accessory protein Basal machinery
hybO hydrogenase 2, small subunit Basal machinery
hycA regulator of the transcriptional regulator FhlA Intermodular
hycB hydrogenase 3, Fe-S subunit Intermodular
hycC hydrogenase 3, membrane subunit Intermodular
hycD hydrogenase 3, membrane subunit Intermodular
hycE hydrogenase 3, large subunit Intermodular
hycF formate hydrogenlyase complex iron-sulfur protein Intermodular
hycG hydrogenase 3 and formate hydrogenlyase complex, HycG subunit Intermodular
hycH protein required for maturation of hydrogenase 3 Intermodular
hycI hydrogenase 3 maturation protease Intermodular
hydN putative electron transport protein HydN 1.19
hyfA hydrogenase 4, component A Basal machinery
hyfB hydrogenase 4, component B Basal machinery
hyfC hydrogenase 4, component C Basal machinery
hyfD hydrogenase 4, component D Basal machinery
hyfE hydrogenase 4, component E Basal machinery
hyfF hydrogenase 4, component F Basal machinery
hyfG hydrogenase 4, large subunit Basal machinery
hyfH hydrogenase 4, component H Basal machinery
hyfI hydrogenase 4, small subunit Basal machinery
hyfJ hydrogenase 4 component J, putative protein processing element Basal machinery
hyfR HyfR DNA-binding transcriptional activator Basal machinery
hyi -- 9
hypA accessory protein for nickel incorporation into hydrogenase 3 1.19
hypB accessory protein for nickel incorporation into hydrogenase isoenzymes 1.19
hypC HypC, protein involved in hydrogenase 3 maturation 1.19
hypD HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor 1.19
hypE hydrogenase maturation protein, carbamoyl dehydratase 1.19
hypF hydrogenase maturation protein, carbamoyltransferase Intermodular
hypT HypT transcriptional dual regulator 1.17
ibaG predicted DNA-binding transcriptional regulator 1.1
ibpA small heat shock protein IbpA Basal machinery
ibpB small heat shock protein IbpB Basal machinery
icd Icd 1.1
iclR IclR transcriptional repressor 1.3
idnK D-gluconate kinase, thermosensitive Basal machinery
ihfA integration host factor (IHF), α subunit Global regulator
ihfB integration host factor (IHF), β subunit Global regulator
ileS isoleucyl-tRNA synthetase Basal machinery
ilvA IlvA Basal machinery
ilvB acetohydroxy acid synthase I, large subunit Basal machinery
ilvC -- 63
ilvD IlvD Basal machinery
ilvE IlvE Basal machinery
ilvG_1 acetolactate synthase II, large subunit, N-ter fragment (pseudogene) Basal machinery
ilvG_2 acetolactate synthase II, large subunit, C-ter fragment (pseudogene) Basal machinery
ilvH IlvH Basal machinery
ilvI IlvI Basal machinery
ilvL ilvGEDA operon leader peptide Basal machinery
ilvM IlvM Basal machinery
ilvN acetohydroxy acid synthase I, small subunit Basal machinery
ilvX small protein Basal machinery
ilvY IlvY DNA-binding transcriptional dual regulator 63
inaA pH-inducible protein involved in stress response 1.2
infA protein chain initiation factor IF-1 Basal machinery
infB protein chain initiation factor IF2 1.16
infC protein chain initiation factor IF-3 Basal machinery
insC5 -- Basal machinery
insCD-5 IS2 element transposase InsAB' Basal machinery
insD5 -- Basal machinery
insH11 -- Basal machinery
insI1 -- Basal machinery
insN1 -- Basal machinery
insO1 -- Basal machinery
intS CPS-53 (KpLE1) prophage; prophage CPS-53 integrase Basal machinery
iraD inhibitor of σS proteolysis Basal machinery
iraM inhibitor of σS proteolysis 1.1
iraP anti-adaptor protein for σS stabilization Basal machinery
iscA iron-sulfur cluster assembly protein 1.20
iscR IscR DNA-binding transcriptional dual regulator 1.20
iscS cysteine desulfurase monomer 1.20
iscU scaffold protein for iron-sulfur cluster assembly 1.20
iscX regulator of iron-sulfur cluster assembly Basal machinery
ispH 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Basal machinery
istR-1 Istr-1 Basal machinery
ivbL ilvB operon leader peptide Basal machinery
katE catalase II Basal machinery
katG hydroperoxidase I 1.10
kbaY KbaY 7
kbaZ -- 7
kbl Kbl Basal machinery
kdgR KdgR DNA-binding transcriptional repressor 1.31
kdpA K+ transporting ATPase - K+ channel forming subunit 30
kdpB K+ transporting ATPase - ATP binding subunit 30
kdpC K+ transporting ATPase - KdpC subunit 30
kdpE KdpE transcriptional activator 30
kdpF K+ transporting ATPase - KdpF subunit 30
kdsA 3-deoxy-D-manno-octulosonate 8-phosphate synthase Basal machinery
kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase Basal machinery
kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer Basal machinery
kdsD D-arabinose 5-phosphate isomerase Basal machinery
lacA galactoside O-acetyltransferase monomer 34
lacI LacI DNA-binding transcriptional repressor 34
lacY lactose / melibiose:H+ symporter LacY 34
lacZ β-galactosidase monomer 34
lamB LamB 14
lapA lipopolysaccharide assembly protein LapA Basal machinery
lapB lipopolysaccharide assembly protein LapB Basal machinery
leuA 2-isopropylmalate synthase Basal machinery
leuB LeuB Basal machinery
leuC LeuC Basal machinery
leuD LeuD Basal machinery
leuL leu operon leader peptide Basal machinery
leuO LeuO DNA-binding transcriptional dual regulator 1.1
lexA LexA 4
lhgO L-2-hydroxyglutarate oxidase Basal machinery
lhr member of ATP-dependent helicase superfamily II Basal machinery
lipA lipoate synthase monomer 1.21
lipB lipoyl(octanoyl) transferase Basal machinery
livF branched chain amino acid ABC transporter - ATP binding subunit Basal machinery
livG branched chain amino acid transporter - ATP binding subunit Basal machinery
livH branched chain amino acid transporter - membrane subunit Basal machinery
livJ branched chain amino acid ABC transporter - periplasmic binding protein Basal machinery
livK leucine ABC transporter - periplasmic binding protein Basal machinery
livM branched chain amino acid transporter - membrane subunit Basal machinery
lldD L-lactate dehydrogenase 49
lldP (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP 49
lldR LldR transcriptional repressor 49
lnt apolipoprotein N-acyltransferase Basal machinery
loiP outer membrane metallopeptidase Basal machinery
lolA periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer Basal machinery
lon Lon Basal machinery
lpd E3 monomer 1.21
lptA LptA Basal machinery
lptB LptB Basal machinery
lptC LptC Basal machinery
lptD outer membrane lipopolysaccharide transport and assembly complex - LptD subunit Basal machinery
lpxA LpxA Basal machinery
lpxB LpxB Basal machinery
lpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase 1.21
lpxD -- Basal machinery
lpxP palmitoleoyl acyltransferase Basal machinery
lrhA LrhA DNA-binding transcriptional dual regulator 1.1
lrp Lrp transcriptional dual regulator Global regulator
lspA prolipoprotein signal peptidase II Basal machinery
lsrA AI-2 ABC transporter - ATP binding subunit 13
lsrB Autoinducer-2 ABC transporter - periplasmic binding protein 13
lsrC Autoinducer-2 ABC transporter - membrane subunit 13
lsrD Autoinducer-2 ABC transporter - membrane subunit 13
lsrF predicted class I aldolase 13
lsrG Autoinducer 2-degrading protein 13
lsrK autoinducer-2 kinase 13
lsrR LsrR 13
luxS S-ribosylhomocysteine lyase Basal machinery
lysA LysA 2
lysC LysC 2
lysP lysine:H+ symporter 2
lysU lysyl-tRNA synthetase Basal machinery
lyx -- Basal machinery
malE maltose ABC transporter - periplasmic binding protein 14
malF maltose ABC transporter - membrane subunit 14
malG maltose ABC transporter - membrane subunit 14
malI MalI DNA-binding transcriptional repressor 47
malK maltose ABC transporter - ATP binding subunit 14
malM maltose regulon periplasmic protein 14
malP maltodextrin phosphorylase monomer 14
malQ amylomaltase/amylomaltase/amylomaltase 14
malS α-amylase Basal machinery
malT MalT transcriptional activator 14
malX MalX PTS permease 47
malY bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon 47
manA mannose-6-phosphate isomerase Basal machinery
manX mannose PTS permease - ManX subunit Basal machinery
manY mannose PTS permease - ManY subunit Basal machinery
manZ mannose PTS permease - ManZ subunit Basal machinery
marA MarA DNA-binding transcriptional dual regulator 1.2
marB multiple antibiotic resistance protein 1.2
marR MarR transcriptional repressor 1.2
mazE MazE antitoxin of the MazF-MazE toxin-antitoxin system 43
mazF MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity 43
mazG nucleoside triphosphate pyrophosphohydrolase 43
mcbA protein involved in colanic acid production 33
mcbR McbR DNA-binding transcriptional dual regulator 33
mdh malate dehydrogenase 3
mdtA MdtABC-TolC multidrug efflux transport system - putative membrane fusion protein 1.1
mdtB MdtABC-TolC multidrug efflux system - membrane subunit 1.1
mdtC MdtABC-TolC multidrug efflux system - membrane subunit 1.1
mdtD predicted transport protein MdtD 1.1
mdtE MdtEF-TolC multidrug efflux transport system - membrane fusion protein 1.1
mdtF MdtEF-TolC multidrug efflux transport system - permease subunit 1.1
melA α-galactosidase monomer 48
melB melibiose:H+/Na+/Li+ symporter 48
melR MelR DNA-binding transcriptional dual regulator 48
menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase Basal machinery
metA homoserine O-succinyltransferase 1.4
metB MetB Basal machinery
metC MetC 1.4
metE cobalamin-independent homocysteine transmethylase 1.4
metF 5,10-methylenetetrahydrofolate reductase 1.4
metH cobalamin-dependent methionine synthase Basal machinery
metI L-methionine / D-methionine ABC transporter - membrane subunit 1.17
metJ MetJ transcriptional repressor 1.4
metK methionine adenosyltransferase Basal machinery
metL MetL Basal machinery
metN L-methionine / D-methionine ABC transporter - ATP binding subunit 1.17
metQ L-methionine / D-methionine ABC transporter - periplasmic binding protein 1.17
metR MetR 1.4
mfd transcription-repair coupling factor Basal machinery
mglA galactose ABC transporter - ATP binding subunit Basal machinery
mglB galactose ABC transporter - periplasmic binding protein Basal machinery
mglC galactose ABC transporter - membrane subunit Basal machinery
mgrB negative feedback regulator of the PhoQP system 1.1
mgtA Mg2+ / Ni2+ transporting ATPase 1.1
mgtL predicted leader peptide 1.1
mhpA 3-(3-hydroxyphenyl)propionate 2-hydroxylase 19
mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase monomer 19
mhpC 2-hydroxy-6-ketonona-2,4-dienedioate hydrolase 19
mhpD -- 19
mhpE 4-hydroxy-2-ketovalerate aldolase 19
mhpF acetaldehyde dehydrogenase 2 19
mhpR MhpR transcriptional activator 19
miaA tRNA(i6A37) synthase Basal machinery
micA MicA Basal machinery
mioC flavoprotein involved in biotin synthesis Basal machinery
mlc Mlc DNA-binding transcriptional repressor 1.27
mlrA MlrA DNA binding transcriptional activator 1.1
mngB α-mannosidase 50
mngR MngR 50
mnmG protein involved in modification of U34 in tRNA Basal machinery
mntH Mn2+ / Fe2+: H+ symporter MntH Intermodular
mntP manganese export protein Basal machinery
mntR MntR 1.13
mntS small protein MntS Basal machinery
moaA molybdopterin biosynthesis protein A 1.15
moaB MoaB protein 1.15
moaC MoaC monomer 1.15
moaD molybdopterin synthase small subunit 1.15
moaE molybdopterin synthase large subunit 1.15
modA molybdate ABC transporter - periplasmic binding protein 1.15
modB molybdate ABC transporter - membrane subunit 1.15
modC molybdate ABC transporter - ATP binding subunit 1.15
modE ModE 1.15
moeA molybdopterin molybdenumtransferase Basal machinery
moeB molybdopterin-synthase adenylyltransferase Basal machinery
motA MotA protein, proton conductor component of motor; no effect on switching 1.1
motB MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall 1.1
mpl UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminoheptanedioate-D-alanine ligase/UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase Basal machinery
mprA MprA 53
mqsA MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor 41
mqsR mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system 41
mraY phospho-N-acetylmuramoyl-pentapeptide transferase 1.21
mraZ MraZ DNA-binding transcriptional repressor 1.21
mreB MreB Basal machinery
mreC MreC Basal machinery
mreD MreD Basal machinery
mscM mechanosensitive channel of miniconductance McsM monomer Basal machinery
msyB acidic protein that suppresses heat sensitivity of a secY mutant Basal machinery
mtlA MtlA 1.1
mtlD mannitol-1-phosphate 5-dehydrogenase 1.1
mtlR MtlR DNA-binding transcriptional repressor 1.1
mtnN -- Basal machinery
mtr tryptohan / indole:H+ symporter Mtr Intermodular
murC UDP-N-acetylmuramate-alanine ligase 1.21
murD UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase 1.21
murE UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase 1.21
murF D-alanyl-D-alanine-adding enzyme 1.21
murG N-acetylglucosaminyl transferase 1.21
murI glutamate racemase 1.1
murP N-acetylmuramic acid PTS permease / anhydro-N-acetylmuramic acid permease 56
murQ N-acetylmuramic acid 6-phosphate etherase 56
murR MurR 56
mutL MutL Basal machinery
mutM formamidopyrimidine DNA glycosylase Basal machinery
mutS MutS Basal machinery
mzrA MzrA 1.1
nac Nac DNA-binding transcriptional dual regulator 54
nadB L-aspartate oxidase 67
nadE NadE Basal machinery
nadR NadR DNA-binding transcriptional repressor and NMN adenylyltransferase 67
nagA N-acetylglucosamine-6-phosphate deacetylase Intermodular
nagB glucosamine-6-phosphate deaminase 1.5
nagC NagC DNA-binding transcriptional dual regulator 1.5
nagE NagE 1.5
nanA N-acetylneuraminate lyase 1.7
nanC N-acetylneuraminic acid outer membrane channel Intermodular
nanE predicted N-acetylmannosamine-6-phosphate epimerase 1.7
nanK N-acetylmannosamine kinase 1.7
nanM N-acetylneuraminate mutarotase Intermodular
nanR NanR DNA-binding transcriptional dual regulator 1.7
nanT N-acetylneuraminate:H+ symporter 1.7
napA large subunit of periplasmic nitrate reductase, molybdoprotein Intermodular
napB subunit of periplasmic nitrate reductase, cytochrome c550 protein Intermodular
napC periplasmic nitrate reductase, cytochrome c protein Intermodular
napD signal peptide-binding chaperone for NapA Intermodular
napF ferredoxin-type protein Intermodular
napG ferredoxin-type protein Intermodular
napH ferredoxin-type protein Intermodular
narG nitrate reductase A, α subunit Basal machinery
narH nitrate reductase A, β subunit Basal machinery
narI nitrate reductase A, γ subunit Basal machinery
narJ molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 Basal machinery
narK nitrate:nitrite antiporter NarK Basal machinery
narL NarL Global regulator
narP NarP 1.12
narV nitrate reductase Z, γ subunit Basal machinery
narW NarW, probable private chaperone for NarZ nitrate reductase subunit Basal machinery
narX NarX 1.15
ndh NADH:ubiquinone oxidoreductase II 1.21
nemA N-ethylmaleimide reductase, FMN-linked 1.1
nemR NemR DNA-binding transcriptional repressor 1.1
nfo endonuclease IV Basal machinery
nfsA NADPH nitroreductase Intermodular
nfsB NfsB monomer 1.2
nfuA iron-sulfur cluster scaffold protein 1.20
nhaA NhaA 1.6
nhaB sodium:H+ antiporter Basal machinery
nhaR NhaR transcriptional activator 1.6
nikA nickel ABC transporter - periplasmic binding protein 21
nikB nickel ABC transporter - membrane subunit 21
nikC nickel ABC transporter - membrane subunit 21
nikD nickel ABC transporter - ATP binding subunit 21
nikE nickel ABC transporter - ATP binding subunit 21
nikR NikR DNA-binding transcriptional repressor, Ni-binding 21
nirB nitrite reductase, large subunit 1.12
nirC nitrite transporter NirC 1.12
nirD nitrite reductase, small subunit 1.12
nlpA lipoprotein-28 1.1
nlpC NlpC-putative lipoprotein hydrolase Basal machinery
nlpD NlpD divisome associated factor; activates peptidoglycan hydrolase Basal machinery
nmpC outer membrane porin protein; locus of qsr prophage 1.1
nohA Qin prophage; predicted packaging protein Basal machinery
norR NorR DNA-binding transcriptional dual regulator 51
norV flavorubredoxin 51
norW NADH:flavorubredoxin reductase 51
nrdA ribonucleoside diphosphate reductase 1, α subunit 2
nrdB ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2
nrdD ribonucleoside-triphosphate reductase 2
nrdE NrdE 2
nrdF NrdF 2
nrdG NrdG 2
nrdH glutaredoxin-like protein 2
nrdI flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase 2
nrdR NrdR 2
nrfA formate dependent nitrite reductase - NrfA subunit Intermodular
nrfB formate-dependent nitrite reductase - penta-heme cytochrome c Intermodular
nrfC formate-dependent nitrite reductase, 4Fe-4S subunit Intermodular
nrfD formate dependent nitrate reductase - NrfD subunit Intermodular
nrfE formate-dependent nitrite reductase; possible assembly function Intermodular
nrfF activator of formate-dependent nitrite reductase complex Intermodular
nrfG NrfG Intermodular
nsrR NsrR 1.1
nuoA NADH:ubiquinone oxidoreductase, membrane subunit A Basal machinery
nuoB NADH:ubiquinone oxidoreductase, chain B Basal machinery
nuoC NADH:ubiquinone oxidoreductase, chain CD Basal machinery
nuoE NADH:ubiquinone oxidoreductase, chain E Basal machinery
nuoF NADH:ubiquinone oxidoreductase, chain F Basal machinery
nuoG NADH:ubiquinone oxidoreductase, chain G Basal machinery
nuoH NADH:ubiquinone oxidoreductase, membrane subunit H Basal machinery
nuoI NADH:ubiquinone oxidoreductase, chain I Basal machinery
nuoJ NADH:ubiquinone oxidoreductase, membrane subunit J Basal machinery
nuoK NADH:ubiquinone oxidoreductase, membrane subunit K Basal machinery
nuoL NADH:ubiquinone oxidoreductase, membrane subunit L Basal machinery
nuoM NADH:ubiquinone oxidoreductase, membrane subunit M Basal machinery
nuoN NADH:ubiquinone oxidoreductase, membrane subunit N Basal machinery
nupC nucleoside:H+ symporter NupC Basal machinery
nupG nucleoside:H+ symporter NupG 1.33
nusA transcription termination/antitermination L factor 1.16
nusB transcription antitermination protein NusB Basal machinery
ogt O6-alkylguanine-DNA-alkyltransferase Basal machinery
ompA outer membrane protein A Basal machinery
ompC OmpC 1.1
ompF OmpF 1.1
ompR OmpR 1.1
ompX outer membrane protein X Basal machinery
opgG periplasmic protein associated with synthesis of osmoregulated periplasmic glucans (OPGs) Basal machinery
opgH membrane glycosyltransferase; synthesis of osmoregulated periplasmic glucans (OPGs) Basal machinery
oppA peptide ABC transporter - periplasmic binding protein Basal machinery
oppB murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit Basal machinery
oppC murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit Basal machinery
oppD murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit Basal machinery
oppF murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit Basal machinery
osmB OsmB osmotically inducible lipoprotein Basal machinery
osmC osmotically inducible peroxidase OsmC Intermodular
osmE osmotically inducible protein OsmE Basal machinery
osmF OsmF Basal machinery
osmY hyperosmotically inducible periplasmic protein 1.1
otsA trehalose-6-phosphate synthase Basal machinery
otsB trehalose-6-phosphate phosphatase Basal machinery
oxyR OxyR DNA-binding transcriptional dual regulator 1.10
paaA ring 1,2-phenylacetyl-CoA epoxidase, monooxygenase subunit 6
paaB ring 1,2-phenylacetyl-CoA epoxidase subunit 6
paaC ring 1,2-phenylacetyl-CoA epoxidase, structural subunit 6
paaD phenylacetate degradation protein 6
paaE ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit 6
paaF predicted 2,3-dehydroadipyl-CoA hydratase 6
paaG predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) 6
paaH 3-hydroxyadipyl-CoA dehydrogenase (NAD+) 6
paaI phenylacetyl-CoA thioesterase 6
paaJ β-ketoadipyl-CoA thiolase 6
paaK phenylacetate-CoA ligase 6
paaX PaaX 6
paaY 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase Basal machinery
paaZ oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase 6
pabA PabA Basal machinery
panB 3-methyl-2-oxobutanoate hydroxymethyltransferase monomer Basal machinery
panC pantothenate synthetase monomer Basal machinery
panF pantothenate:Na+ symporter Basal machinery
panZ maturation factor for PanD Basal machinery
patA putrescine aminotransferase Basal machinery
pck phosphoenolpyruvate carboxykinase (ATP) 1.1
pcm L-isoaspartate protein carboxylmethyltransferase type II Basal machinery
pcnB poly(A) polymerase I Basal machinery
pdhR PdhR DNA-binding transcriptional dual regulator 1.21
pdxA PdxA Basal machinery
pdxJ PdxJ Basal machinery
pepA aminopeptidase A/I 1.29
pepD peptidase D Basal machinery
pfkA 6-phosphofructokinase-1 monomer 1.1
pfkB 6-phosphofructokinase-2 monomer Basal machinery
pflB PflB Basal machinery
pgaA partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin 1.6
pgaB poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase 1.6
pgaC poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit 1.6
pgaD poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit 1.6
pgi -- Basal machinery
pgk phosphoglycerate kinase 1.1
pgpA phosphatidylglycerophosphatase A Basal machinery
pheA PheA Basal machinery
pheL leader peptide of chorismate mutase-P-prephenate dehydratase Basal machinery
pheP phenylalanine:H+ symporter PheP Basal machinery
phnC phosphonate ABC transporter - ATP binding subunit 1.9
phnD phosphonate ABC transporter - periplasmic binding protein 1.9
phnE -- 1.9
phnE_2 phosphonate/organophosphate ester transporter (pseudogene) 1.9
phnF PhnF predicted transcriptional regulator 1.9
phnG PhnG subunit of methylphosphonate degradation complex 1.9
phnH PhnH subunit of methylphosphonate degradation complex 1.9
phnI PhnI subunit of methylphosphonate degradation complex 1.9
phnJ carbon-phosphorous lyase 1.9
phnK predicted carbon-phosphorous lyase subunit 1.9
phnL PhnL subunit of methylphosphonate degradation complex 1.9
phnM RPnTP hydrolase 1.9
phnN ribose 1,5-bisphosphokinase 1.9
phnO aminoalkylphosphonate N-acetyltransferase 1.9
phnP 5-phospho-α-D-ribosyl 1,2-cyclic phosphate phosphodiesterase 1.9
phoA PhoA 1.9
phoB PhoB transcriptional dual regulator 1.9
phoE PhoE 1.9
phoH ATP-binding protein 1.9
phoP PhoP 1.1
phoQ PhoQ sensory histidine kinase 1.1
phoR PhoR 1.9
phoU -- 1.9
phr deoxyribodipyrimidine photolyase (photoreactivation) Basal machinery
pka peptidyl-lysine acetyltransferase Basal machinery
plsB glycerol-3-phosphate acyltransferase Basal machinery
pncB nicotinate phosphoribosyltransferase Basal machinery
pncC NMN aminohydrolase Basal machinery
pnp polynucleotide phosphorylase monomer 1.16
polA DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease 2
polB DNA polymerase II 4
poxB pyruvate oxidase monomer Basal machinery
ppdD prepilin peptidase dependent protein Basal machinery
pphA protein phosphatase 1 modulates phosphoproteins, signals protein misfolding Basal machinery
ppiA peptidyl-prolyl cis-trans isomerase A (rotamase A) Intermodular
ppiD periplasmic folding chaperone 1.1
ppk Ppk Basal machinery
ppsA phosphoenolpyruvate synthetase 1.1
ppx exopolyphosphatase monomer Basal machinery
pqiA paraquat-inducible protein A 1.2
pqiB paraquat-inducible protein B 1.2
preA NADH-dependent dihydropyrimidine dehydrogenase subunit Basal machinery
preT NADH-dependent dihydropyrimidine dehydrogenase subunit Basal machinery
prfA peptide chain release factor RF1 Basal machinery
prfB peptide chain release factor RF2 Basal machinery
priB PriB Basal machinery
prlC oligopeptidase A Basal machinery
prlF PrlF antitoxin Basal machinery
prmA methyltransferase for 50S ribosomal subunit protein L11 Basal machinery
prmC protein-(glutamine-N5) methyltransferase Basal machinery
proP ProP Basal machinery
proS prolyl-tRNA synthetase Basal machinery
proV glycine betaine / proline ABC transporter - ATP binding subunit Basal machinery
proW glycine betaine / proline ABC transporter - membrane subunit Basal machinery
proX glycine betaine / proline ABC transporter - periplasmic binding protein Basal machinery
prpB 2-methylisocitrate lyase Basal machinery
prpC 2-methylcitrate synthase Basal machinery
prpD 2-methylcitrate dehydratase Basal machinery
prpE propionyl-CoA synthetase Basal machinery
prpR PrpR DNA-binding transcriptional dual regulator 23
prs ribose-phosphate diphosphokinase Basal machinery
psd phosphatidylserine decarboxylase, proenzyme Basal machinery
psiE predicted phosphate starvation-inducible protein 1.9
psiF conserved protein 1.9
pspA regulatory protein for the phage shock protein operon 18
pspB stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair 18
pspC PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair 18
pspD peripheral inner membrane phage-shock protein 18
pspE thiosulfate sulfurtransferase 18
pspF PspF transcriptional dual regulator 18
pspG phage shock protein G 18
pssA PssA Basal machinery
pstA phosphate ABC transporter - membrane subunit 1.9
pstB phosphate ABC transporter - ATP binding subunit 1.9
pstC phosphate ABC transporter - membrane subunit 1.9
pstS phosphate ABC transporter - periplasmic binding protein 1.9
pth peptidyl-tRNA hydrolase Basal machinery
ptsG glucose PTS permease - PtsG subunit Intermodular
ptsH HPr Intermodular
ptsI PtsI Intermodular
ptsN phosphotransferase system enzyme IIA, regulation of potassium transport Basal machinery
purA PurA Intermodular
purB adenylosuccinate lyase 1.11
purC PurC 1.11
purD phosphoribosylamine-glycine ligase 1.11
purE PurE Basal machinery
purF PurF 1.11
purH AICAR transformylase/IMP cyclohydrolase 1.11
purK N5-carboxyaminoimidazole ribonucleotide synthetase monomer Basal machinery
purL phosphoribosylformylglycinamide synthetase Basal machinery
purM PurM 1.11
purN phosphoribosylglycinamide formyltransferase 1 1.11
purR PurR 1.11
purU formyltetrahydrofolate deformylase Basal machinery
putA fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase 1.1
putP proline:Na+ symporter 1.1
puuB γ-glutamylputrescine oxidase Basal machinery
puuC γ-glutamyl-γ-aminobutyraldehyde dehydrogenase Basal machinery
puuD γ-glutamyl-γ-aminobutyrate hydrolase Basal machinery
puuE 4-aminobutyrate aminotransferase Basal machinery
puuR PuuR DNA-binding transcriptional repressor Basal machinery
pykA pyruvate kinase II monomer Basal machinery
pykF pyruvate kinase I monomer 1.1
pyrC PyrC 1.11
pyrD dihydroorotate dehydrogenase, type 2 Basal machinery
pyrF PyrF Basal machinery
pyrH UMP kinase Basal machinery
qseB QseB transcriptional activator 59
qseC QseC sensory histidine kinase 59
queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase Basal machinery
racR Rac prophage; predicted DNA-binding transcriptional regulator Basal machinery
rapA -- Basal machinery
rapZ RNase adaptor protein Basal machinery
rarA recombination factor Basal machinery
rbfA 30S ribosome binding factor 1.16
rbsA ribose ABC transporter - putative ATP binding subunit 27
rbsB ribose ABC transporter - putative periplasmic binding protein 27
rbsC ribose ABC transporter - membrane subunit 27
rbsD ribose pyranase 27
rbsK ribokinase 27
rbsR RbsR DNA-binding transcriptional dual regulator 27
rcnA Ni2+ / Co2+ efflux transporter 45
rcnB periplasmic protein involved in nickel/cobalt efflux 45
rcnR RcnR DNA-binding transcriptional repressor 45
rcsA positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression 1.1
rcsB RcsB 1.1
rcsD RcsD phosphotransferase Basal machinery
rdgB -- Basal machinery
rdoA serine/threonine protein kinase 1.1
recA DNA strand exchange and recombination protein with protease and nuclease activity 4
recC RecC Basal machinery
recF ssDNA and dsDNA binding, ATP binding 2
recG RecG DNA helicase Basal machinery
recJ RecJ Basal machinery
recN protein used in recombination and DNA repair 4
recO protein interacts with RecR and possibly RecF proteins Basal machinery
recR recombination and repair Basal machinery
recX regulatory protein RecX; inhibitor of RecA 4
relA GDP pyrophosphokinase/GTP pyrophosphokinase Basal machinery
relB RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor 38
relE Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB 38
rfaC -- Basal machinery
rfaG -- Basal machinery
rhaA L-rhamnose isomerase 24
rhaB L-rhamnulose kinase 24
rhaD rhamnulose-1-phosphate aldolase monomer 24
rhaR RhaR transcriptional activator 24
rhaS RhaS 24
rhaT rhamnose / lyxose:H+ symporter 24
ribA GTP cyclohydrolase II 1.2
ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase Basal machinery
ribE RibE Basal machinery
ribF bifunctional riboflavin kinase / FMN adenylyltransferase Basal machinery
rihB ribonucleoside hydrolase 2 (pyrimidine-specific) Basal machinery
rimK ribosomal protein S6 modification protein Intermodular
rimM ribosome maturation protein Basal machinery
rimP ribosome maturation protein 1.16
rlmE 23S rRNA 2'-O-ribose U2552 methyltransferase Basal machinery
rluA 23S rRNA and tRNA pseudouridine synthase Basal machinery
rnb ribonuclease II Basal machinery
rnc RNase III Basal machinery
rnd RNase D Basal machinery
rne RNase E Basal machinery
rnhB RNAse HII, degrades RNA of DNA-RNA hybrids Basal machinery
rnlA CP4-57 prophage; RNase LS, toxin of the RnlAB toxin-antitoxin system 1.20
rnlB CP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system Basal machinery
rob Rob DNA-binding transcriptional activator 1.2
roxA ribosomal protein-arginine oxygenase Basal machinery
rpe ribulose-5-phosphate 3-epimerase Basal machinery
rpiB allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer Basal machinery
rpiR AlsR DNA-binding transcriptional repressor Basal machinery
rplB 50S ribosomal subunit protein L2 Basal machinery
rplC 50S ribosomal subunit protein L3 Basal machinery
rplD 50S ribosomal subunit protein L4 Basal machinery
rplI 50S ribosomal subunit protein L9 Basal machinery
rplP 50S ribosomal subunit protein L16 Basal machinery
rplQ 50S ribosomal subunit protein L17 Basal machinery
rplS 50S ribosomal subunit protein L19 Basal machinery
rplT 50S ribosomal subunit protein L20 Basal machinery
rplU 50S ribosomal subunit protein L21 1.1
rplV 50S ribosomal subunit protein L22 Basal machinery
rplW 50S ribosomal subunit protein L23 Basal machinery
rpmA 50S ribosomal subunit protein L27 1.1
rpmC 50S ribosomal subunit protein L29 Basal machinery
rpmE 50S ribosomal subunit protein L31 Basal machinery
rpmI 50S ribosomal subunit protein L35 Basal machinery
rpoA RNA polymerase, α subunit Basal machinery
rpoD RNA polymerase, sigma 70 (sigma D) factor Global regulator
rpoE RNA polymerase, sigma 24 (sigma E) factor Global regulator
rpoH RNA polymerase, sigma 32 (sigma H) factor Global regulator
rpoN RNA polymerase, sigma 54 (sigma N) factor Global regulator
rpoS RNA polymerase, sigma S (sigma 38) factor Global regulator
rpoZ RNA polymerase, ω subunit Basal machinery
rpsA 30S ribosomal subunit protein S1 Basal machinery
rpsB 30S ribosomal subunit protein S2 Basal machinery
rpsC 30S ribosomal subunit protein S3 Basal machinery
rpsD 30S ribosomal subunit protein S4 Basal machinery
rpsF 30S ribosomal subunit protein S6 Basal machinery
rpsJ 30S ribosomal subunit protein S10 Basal machinery
rpsK 30S ribosomal subunit protein S11 Basal machinery
rpsM 30S ribosomal subunit protein S13 Basal machinery
rpsO 30S ribosomal subunit protein S15 1.16
rpsP 30S ribosomal subunit protein S16 Basal machinery
rpsQ 30S ribosomal subunit protein S17 Basal machinery
rpsR 30S ribosomal subunit protein S18 Basal machinery
rpsS 30S ribosomal subunit protein S19 Basal machinery
rpsU 30S ribosomal subunit protein S21 4
rraA ribonuclease E inhibitor protein Basal machinery
rraB ribonuclease E inhibitor protein B Basal machinery
rrrD DLP12 prophage; lysozyme Basal machinery
rsd regulator of σ70D), stationary phase protein Basal machinery
rseA anti-sigma factor Basal machinery
rseB rseB Basal machinery
rseC SoxR and σE factor regulatory protein RseC Basal machinery
rseP RseP zinc protease, signal peptide peptidase Basal machinery
rsmG 16S rRNA m7G527 methyltransferase Basal machinery
rsmH 16S rRNA m4C1402 methyltransferase 1.21
rsmJ 16S rRNA m2G1516 methyltransferase Basal machinery
rssA conserved protein Basal machinery
rssB regulator of RpoS Basal machinery
rstA RstA transcriptional regulator 1.1
rstB RstB sensory histidine kinase 1.1
rtcA RNA 3'-terminal phosphate cyclase Basal machinery
rtcB RNA ligase Basal machinery
rutA pyrimidine oxygenase 1.1
rutB peroxyureidoacrylate / ureidoacrylate amido hydrolase 1.1
rutC predicted aminoacrylate peracid reductase 1.1
rutD predicted aminoacrylate hydrolase 1.1
rutE predicted malonic semialdehyde reductase 1.1
rutF flavin reductase 1.1
rutG uracil:H+ symporter RutG 1.1
rutR RutR DNA-binding transcriptional dual regulator 1.1
ruvA branch migration of Holliday structures; repair 4
ruvB branch migration of Holliday structures; repair helicase 4
rybA RybA small RNA Basal machinery
rzpD DLP12 prophage; predicted murein endopeptidase Basal machinery
safA two-component system connector protein 1.1
sbmA -- Basal machinery
sbmC DNA gyrase inhibitor Basal machinery
sdaA L-serine deaminase I Basal machinery
sdhA succinate:quinone oxidoreductase, FAD binding protein Basal machinery
sdhB succinate:quinone oxidoreductase, iron-sulfur cluster binding protein Basal machinery
sdhC succinate:quinone oxidoreductase, membrane protein SdhC Basal machinery
sdhD succinate:quinone oxidoreductase, membrane protein SdhC Basal machinery
sdiA SdiA DNA-binding transcriptional dual regulator 1.14
secG SecG Basal machinery
serA -- Basal machinery
serC -- Basal machinery
setA sugar / lactose efflux transporter SetA 12
sgbE L-ribulose-5-phosphate 4-epimerase Basal machinery
sgbH 3-keto-L-gulonate 6-phosphate decarboxylase Basal machinery
sgbU predicted L-xylulose 5-phosphate 3-epimerase Basal machinery
sgrR SgrR DNA-binding transcriptional dual regulator 12
sgrT SgrT, regulator of PtsG activity 12
shiA shikimate:H+ symporter Basal machinery
shoB toxic peptide ShoB Basal machinery
sixA phosphohistidine phosphatase Basal machinery
skp periplasmic chaperone Basal machinery
slp starvation lipoprotein 1.1
slyA SlyA DNA-binding transcriptional activator 68
slyB outer membrane lipoprotein 1.1
sodA SodA 1.2
sodB SodB Basal machinery
sodC superoxide dismutase (Cu-Zn) Basal machinery
sohB predicted inner membrane peptidase Basal machinery
soxR SoxR DNA-binding transcriptional dual regulator 1.2
soxS SoxS DNA-binding transcriptional dual regulator 1.2
speB SpeB Basal machinery
speD adenosylmethionine decarboxylase, proenzyme Basal machinery
speE SpeE Basal machinery
spoT guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase/GDP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase Basal machinery
spy -- 1.1
sra 30S ribosomal subunit protein S22 1.1
srlA sorbitol PTS permease - SrlA subunit Basal machinery
srlB sorbitol PTS permease - SrlB subunit Basal machinery
srlD SrlD Basal machinery
srlE sorbitol PTS permease - SrlE subunit Basal machinery
srlR GutR DNA-binding transcriptional repressor Basal machinery
sroA SroA 12
sroC SroC 1.1
sroD SroD 1.3
ssb ssDNA-binding protein Basal machinery
ssuA aliphatic sulfonate ABC transporter - periplasmic binding protein 5
ssuB aliphatic sulfonate ABC transporter - ATP binding subunit 5
ssuC aliphatic sulfonate ABC transporter - membrane subunit 5
ssuD alkanesulfonate monooxygenase, FMNH2-dependent 5
ssuE NAD(P)H-dependent FMN reductase 5
stpA H-NS-like DNA-binding protein with RNA chaperone activity Basal machinery
sucA subunit of E1(0) component of 2-oxoglutarate dehydrogenase Basal machinery
sucB SucB Basal machinery
sucC succinyl-CoA synthetase, β subunit Basal machinery
sucD succinyl-CoA synthetase, α subunit Basal machinery
sufA Fe-S cluster assembly, scaffold protein Intermodular
sufB SufB component of SufBCD Fe-S cluster scaffold complex Intermodular
sufC SufC component of SufBCD Fe-S cluster scaffold complex Intermodular
sufD SufD component of SufBCD Fe-S cluster scaffold complex Intermodular
sufE sulfur acceptor for SufS cysteine desulfurase Intermodular
sufS L-cysteine desulfurase Intermodular
sulA SOS cell division inhibitor Basal machinery
surA peptidyl-prolyl cis-trans isomerase (PPIase) Basal machinery
symE toxin-like protein of the SOS response 4
talA transaldolase A Basal machinery
tam trans-aconitate 2-methyltransferase 13
tap -- 1.1
tar -- 1.1
tatA TatA Basal machinery
tatB TatB Basal machinery
tatC TatC Basal machinery
tatD ssDNA/RNA exonuclease, 3' → 5' specific Basal machinery
tauA taurine ABC transporter - periplasmic binding protein 5
tauB taurine ABC transporter - ATP binding subunit 5
tauC taurine ABC transporter - membrane subunit 5
tauD taurine dioxygenase monomer 5
tdcA TdcA DNA-binding transcriptional activator 16
tdcB TdcB 16
tdcC serine / threonine:H+ symporter TdcC 16
tdcD propionate kinase 16
tdcE 2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive 16
tdcF predicted enamine/imine deaminase 16
tdcG L-serine deaminase III 16
tdcR TdcR DNA-binding transcriptional activator 16
tdh Tdh Basal machinery
tfaQ Qin prophage; predicted tail fibre assembly protein Basal machinery
thiB -- 12
thiL thiamin monophosphate kinase Basal machinery
thiP thiamin ABC transporter - membrane subunit 12
thiQ thiamin ABC transporter - ATP binding subunit 12
thrA ThrA Basal machinery
thrB ThrB Basal machinery
thrC threonine synthase Basal machinery
thrL thr operon leader peptide Basal machinery
tktB transketolase II Basal machinery
tnaA tryptophanase 17
tnaB tryptophan:H+ symporter TnaB 17
tnaC tna operon leader peptide 17
tolC TolC monomer Basal machinery
tomB protein that modulates Hha toxicity 1.1
tonB TonB energy transducing system - TonB subunit Basal machinery
topA DNA topoisomerase I Basal machinery
torA trimethylamine N-oxide reductase, catalytic subunit 17
torC TorC trimethylamine N-oxide reductase, cytochrome c-type subunit 17
torD chaperone protein for trimethylamine-N-oxide oxidoreductase I 17
torR TorR 17
tpiA triose phosphate isomerase monomer Basal machinery
tpke11 Tpke11 Basal machinery
tpr predicted protamine-like protein Basal machinery
tpx lipid hydroperoxide peroxidase Basal machinery
treA periplasmic trehalase Basal machinery
treB trehalose PTS permease - TreB subunit 1.1
treC trehalose-6-phosphate hydrolase 1.1
treF cytoplasmic trehalase Basal machinery
treR TreR transcriptional repressor 1.1
trg -- 1.1
trmA tRNA m5U54 methyltransferase Basal machinery
trmD tRNA m1G37 methyltransferase Basal machinery
trmH tRNA (Gm18) 2'-O-methyltransferase Basal machinery
trpA tryptophan synthase, α subunit 1.24
trpB tryptophan synthase, β subunit 1.24
trpC indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1.24
trpD anthranilate synthase component II 1.24
trpE anthranilate synthase component I 1.24
trpL trp operon leader peptide 1.24
trpR TrpR 1.24
trpS tryptophanyl-tRNA synthetase Basal machinery
truB tRNA pseudouridine 55 synthase 1.16
trxA thioredoxin 1 Basal machinery
trxC reduced thioredoxin 2 1.10
tsaE protein involved in threonylcarbamoyladenosine biosynthesis Basal machinery
tsf protein chain elongation factor EF-Ts Basal machinery
tsr -- 1.1
tsx nucleoside channel; receptor of phage T6 and colicin K 1.33
ttdA L-tartrate dehydratase, α subunit 40
ttdB L-tartrate dehydratase, β subunit 40
ttdR Dan 40
ttdT tartrate:succinate antiporter 40
tufA elongation factor Tu Basal machinery
tufB elongation factor Tu Basal machinery
typA protein possibly involved in ribosome structure or function Basal machinery
tyrA TyrA 1.26
tyrB TyrB 1.26
tyrP tyrosine:H+ symporter TyrP 1.26
tyrR TyrR DNA-binding transcriptional dual regulator 1.26
ubiG UbiG Basal machinery
ubiX 3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG 1.11
udp Udp 1.33
ugpA glycerol-3-phosphate ABC transporter - membrane subunit 1.9
ugpB glycerol-3-phosphate ABC transporter - periplasmic binding protein 1.9
ugpC glycerol-3-phosphate ABC transporter - ATP binding subunit 1.9
ugpE glycerol-3-phosphate ABC transporter - membrane subunit 1.9
ugpQ glycerophosphodiester phosphodiesterase, cytosolic 1.9
uhpA UhpA transcriptional activator 66
uhpT hexose-6-phosphate:phosphate antiporter 66
ulaA L-ascorbate PTS permease - UlaA subunit 15
ulaB L-ascorbate PTS permease - UlaB subunit 15
ulaC L-ascorbate PTS permease 15
ulaD 3-keto-L-gulonate 6-phosphate decarboxylase 15
ulaE L-xylulose 5-phosphate 3-epimerase 15
ulaF L-ribulose 5-phosphate 4-epimerase 15
ulaG L-ascorbate 6-phosphate lactonase 15
ulaR UlaR DNA-binding transcriptional repressor 15
umpG broad specificity 5'(3')-nucleotidase and polyphosphatase Basal machinery
umpH UMP phosphatase 1.5
umuC SOS mutagenesis and repair 4
umuD SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC 4
ung uracil-DNA glycosylase 1.1
uof RyhB-regulated fur leader peptide Intermodular
upp Upp Basal machinery
uppP -- Basal machinery
uraA uracil:H+ symporter UraA Basal machinery
uspA universal stress global stress response regulator 1.3
uspB predicted universal stress (ethanol tolerance) protein B Basal machinery
uspD stress protein involved in resistance to UV irradiation Basal machinery
uvrA excision nuclease subunit A Basal machinery
uvrB DNA repair; excision nuclease subunit B 4
uvrC excinuclease ABC, subunit C; repair of UV damage to DNA Basal machinery
uvrD -- Basal machinery
uvrY UvrY transcriptional regulator Basal machinery
uxaB altronate oxidoreductase Basal machinery
uxuA D-mannonate dehydratase 39
uxuB D-mannonate oxidoreductase 39
uxuR UxuR DNA-binding transcriptional repressor 39
valS valyl-tRNA synthetase Basal machinery
ves conserved protein 1.1
waaA KDO transferase Basal machinery
waaB UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase Basal machinery
waaF ADP-heptose:LPS heptosyltransferase II Basal machinery
waaJ UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase Basal machinery
waaL O-antigen ligase Basal machinery
waaO UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase Basal machinery
waaP lipopolysaccharide core heptose (I) kinase Basal machinery
waaQ lipopolysaccharide core heptosyl transferase III Basal machinery
waaS lipopolysaccharide core biosynthesis protein Basal machinery
waaU lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase Basal machinery
waaY lipopolysaccharide core heptose (II) kinase 1.2
waaZ protein involved in KdoIII attachment during lipopolysaccharide core biosynthesis 1.2
wcaA predicted colanic acid biosynthesis glycosyl transferase 1.1
wcaB predicted colanic acid biosynthesis acyl transferase 1.1
wrbA NAD(P)H:quinone oxidoreductase 1.1
wza lipoprotein required for capsular polysaccharide translocation through the outer membrane 1.1
wzb protein-tyrosine phosphatase 1.1
wzc protein-tyrosine kinase 1.1
xapA xanthosine phosphorylase Basal machinery
xapB xanthosine:H+ symporter XapB Basal machinery
xapR XapR transcriptional activator Basal machinery
xdhA xanthine dehydrogenase subunit Basal machinery
xdhB xanthine dehydrogenase subunit, FAD-binding domain Basal machinery
xdhC xanthine dehydrogenase, Fe-S subunit Basal machinery
xerC site-specific tyrosine recombinase Basal machinery
xseA exonuclease VII, large subunit Basal machinery
xthA exonuclease III Basal machinery
xylA XylA 22
xylB xylulokinase 22
xylF xylose ABC transporter - periplasmic binding protein 22
xylG xylose ABC transporter - ATP binding subunit 22
xylH xylose ABC transporter - membrane subunit 22
xylR XylR transcriptional activator 22
yacC predicted protein Basal machinery
yadS conserved inner membrane protein Basal machinery
yadV probable pilin chaperone similar to PapD Basal machinery
yafD conserved protein Basal machinery
yafE predicted S-adenosylmethionine-dependent methyltransferase Basal machinery
yafN antitoxin of the YafO-YafN toxin-antitoxin system Basal machinery
yafO ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system Basal machinery
yafP predicted acyltransferase with acyl-CoA N-acyltransferase domain Basal machinery
yafQ toxin of the YafQ-DinJ toxin-antitoxin system 42
yahA phosphodiesterase, c-di-GMP-specific 1.1
yaiA predicted protein Intermodular
yaiW surface exposed outer membrane lipoprotein Basal machinery
ybaB conserved DNA-binding protein Basal machinery
ybbW YbbW NCS1 Transporter 9
ybbY predicted uracil/xanthine transporter 9
ybdL methionine-oxo-acid transaminase, PLP-dependent Basal machinery
ybdZ MbtH-like protein that enhances the catalytic function of EntF Basal machinery
ybeD conserved protein Basal machinery
ybeX predicted ion transport protein Basal machinery
ybeY endoribonuclease involved in maturation of 16S rRNA and ribosome quality control Basal machinery
ybeZ predicted protein with nucleoside triphosphate hydrolase domain Basal machinery
ybfA predicted protein 1.1
ybfG predicted protein Basal machinery
ybfH predicted protein Basal machinery
ybgA conserved protein Basal machinery
ybiT putative ATP-binding component of a transport system 23
ybjC predicted inner membrane protein Intermodular
ybjN predicted oxidoreductase Intermodular
ybjP predicted lipoprotein Basal machinery
ycaR conserved protein Basal machinery
yccA putative carrier/transport protein; substrate or modulator of FtsH-mediated proteolysis 1.1
yccJ predicted protein 1.1
yccT conserved protein 1.1
ycdT diguanylate cyclase Basal machinery
ycfS L,D-transpeptidase YcfS 1.1
ycgZ predicted protein 29
ychA predicted transcriptional regulator Basal machinery
ychF ribosome-binding ATPase, inhibitor of catalase activity Basal machinery
ychH stress-induced protein Basal machinery
ychQ predicted transcriptional regulator Basal machinery
yciE conserved protein 33
yciF putative structural protein 33
yciG predicted protein 33
yciH translation initiation factor Basal machinery
yciT DNA-binding transcriptional regulator Basal machinery
yciZ hypothetical protein Basal machinery
ycjF conserved inner membrane protein Basal machinery
ycjX conserved protein Basal machinery
yddG aromatic amino acid exporter Basal machinery
ydeO YdeO DNA-binding transcriptional dual regulator 1.1
ydeP acid resistance protein 1.1
ydfN Qin prophage; predicted side tail fibre assembly protein Basal machinery
ydhI predicted inner membrane protein Basal machinery
ydhJ conserved protein Basal machinery
ydhK conserved inner membrane protein Basal machinery
ydhQ conserved protein Basal machinery
ydhT conserved protein 1.12
ydhU predicted cytochrome 1.12
ydhV predicted oxidoreductase 1.12
ydhW predicted protein 1.12
ydhX predicted 4Fe-4S ferredoxin-type protein 1.12
ydhY predicted 4Fe-4S ferredoxin-type protein 1.12
ydiU conserved protein 1.20
ydiV anti-FlhDC factor 1.14
ydjM predicted inner membrane protein regulated by LexA 4
yeaD conserved protein 1.1
yeaR conserved protein Basal machinery
yeaY predicted lipoprotein Basal machinery
yebE conserved inner membrane protein 1.1
yebK predicted DNA-binding transcriptional regulator Basal machinery
yecR predicted protein 1.1
yefM YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor 61
yegR predicted protein 1.1
yehT YehT 60
yehW YehW Basal machinery
yehX YehX Basal machinery
yehY YehY Basal machinery
yeiB conserved inner membrane protein 1.4
yeiL YeiL DNA-binding transcriptional activator Basal machinery
yeiQ predicted dehydrogenase, NAD-dependent Basal machinery
yfaE 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance 2
yfcJ predicted transport protein YfcJ Basal machinery
yfdX predicted protein 1.1
yfeK predicted protein Basal machinery
yfeS conserved protein Basal machinery
yfeX porphyrinogen peroxidase Basal machinery
yfeY predicted outer membrane lipoprotein Basal machinery
yffO CPZ-55 prophage; predicted protein Basal machinery
yffP CPZ-55 prophage; predicted protein Basal machinery
yfgD predicted oxidoreductase Basal machinery
yfgF cyclic di-GMP phosphodiesterase Basal machinery
yfgG predicted protein Basal machinery
ygfA -- Basal machinery
yggE conserved protein Basal machinery
yggL predicted protein Basal machinery
yggN predicted protein Basal machinery
yggW predicted oxidoreductase Basal machinery
yghF predicted secretion pathway protein, C-type protein Basal machinery
ygiA predicted protein Basal machinery
ygiB conserved outer membrane protein Basal machinery
ygiC predicted enzyme with ATPase activity Basal machinery
ygiM predicted signal transduction protein (SH3 domain) Basal machinery
yhaH putative cytochrome Basal machinery
yhaV YhaV toxic endonuclease Basal machinery
yhbS predicted acyltransferase with acyl-CoA N-acyltransferase domain 1.1
yhbT predicted lipid carrier protein 1.1
yhcH conserved protein 1.7
yhdH acrylyl-CoA reductase Basal machinery
yhdN conserved protein Basal machinery
yhdT conserved inner membrane protein Basal machinery
yhfA conserved protein Basal machinery
yhiD predicted Mg(2+) transport ATPase Intermodular
yhiM inner membrane protein with a role in acid resistance 1.1
yhjA predicted cytochrome C peroxidase 1.10
yhjG predicted outer membrane biogenesis protein Basal machinery
yhjJ predicted zinc-dependent peptidase Basal machinery
yiaG predicted transcriptional regulator Basal machinery
yiaJ YiaJ DNA-binding transcriptional repressor Basal machinery
yiaK 2,3-diketo-L-gulonate reductase monomer Basal machinery
yiaL conserved protein Basal machinery
yiaM 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit Basal machinery
yiaN 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit Basal machinery
yiaO 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein Basal machinery
yibQ putative nucleoside (IDP) diphosphatase Basal machinery
yicI α-xylosidase Basal machinery
yicJ YicJ GPH transporter Basal machinery
yidQ conserved outer membrane protein Basal machinery
yieE predicted phosphopantetheinyl transferase Basal machinery
yieF chromate reductase monomer Basal machinery
yifL predicted lipoprotein Basal machinery
yigA conserved protein Basal machinery
yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase Basal machinery
yihG predicted endonuclease Basal machinery
yihI GAP-like protein that activates GTPase activity of Der Basal machinery
yihL YihL putative transcriptional regulator Basal machinery
yihM conserved protein Basal machinery
yiiS conserved protein Basal machinery
yjaZ conserved protein Basal machinery
yjbE predicted protein Basal machinery
yjbF predicted lipoprotein Basal machinery
yjbG conserved protein Basal machinery
yjbH predicted porin Basal machinery
yjcC predicted c-di-GMP-specific phosphodiesterase Basal machinery
yjcH conserved inner membrane protein Basal machinery
yjeF NAD(P)HX epimerase / NAD(P)HX dehydratase Basal machinery
yjeV small protein 2
yjiY inner membrane protein - predicted transporter 60
yjjP predicted inner membrane structural protein Basal machinery
yjjQ predicted DNA-binding transcriptional regulator 1.1
yjjX ITPase/XTPase Basal machinery
yjjZ predicted protein Basal machinery
ykgR small membrane protein Basal machinery
ymfJ e14 prophage; predicted protein Basal machinery
ymgA protein involved in biofilm formation 29
ymgC protein involved in biofilm formation 29
yneJ predicted DNA-binding transcriptional regulator, LysR-type Basal machinery
yneM small membrane protein Basal machinery
ynfE oxidoreductase subunit Basal machinery
ynfF oxidoreductase subunit Basal machinery
ynfG oxidoreductase, predicted Fe-S subunit Basal machinery
ynfH oxidoreductase, predicted membrane anchor subunit Basal machinery
ynfK predicted dethiobiotin synthetase Basal machinery
yoaC predicted protein Basal machinery
yoaE predicted inner membrane protein Basal machinery
yoaG predicted protein Basal machinery
yobF small protein involved in stress responses Basal machinery
yoeB toxin of the YoeB-YefM toxin-antitoxin pair 61
yqhC YqhC DNA-binding transcriptional activator 46
yqhD NADPH-dependent aldehyde reductase 46
yqiG predicted outer membrane usher protein Basal machinery
yqiH predicted periplasmic pilin chaperone Basal machinery
yqiI protein involved in detoxification of methylglyoxal Basal machinery
yqjA membrane transport protein; required for proton-motive force (PMF) dependent drug efflux 1.1
yraP lipoprotein Basal machinery
yrbG inner membrane protein YrbG Basal machinery
yrbL predicted protein 1.1
yrbN small protein Basal machinery
ytfE protein involved in repair of stress-damaged iron-sulfur clusters 1.1
ytfJ conserved protein Basal machinery
ytfK conserved protein Basal machinery
zinT cadmium-induced cadmium binding protein Basal machinery
zntA zinc, cadmium and lead efflux system 58
zntR ZntR transcriptional activator 58
znuA Zn2+ ABC transporter - periplasmic binding protein 37
znuB Zn2+ ABC transporter - membrane subunit 37
znuC Zn2+ ABC transporter - ATP binding subunit 37
zraP zinc homeostasis protein 52
zraR ZraR transcriptional activator 52
zraS ZraS sensory histidine kinase 52
zur Zur 37
zwf glucose 6-phosphate-1-dehydrogenase 1.2