Escherichia coli str. K-12 substr. MG1655 (RNA + All evidences)

All genes
Gene Product description NDA class
aaeA hydroxylated, aromatic carboxylic acid efflux transporter - putative membrane fusion protein Basal machinery
aaeB hydroxylated, aromatic carboxylic acid efflux transporter - putative membrane subunit Basal machinery
aaeR quorum sensing transcriptional regulator of LYSR-type Basal machinery
aaeX hypothetical protein Basal machinery
aat leucyl, phenylalanyl-tRNA-protein transferase Basal machinery
accA acetyl-CoA carboxyltransferase, α subunit Basal machinery
accB biotin carboxyl carrier protein Basal machinery
accC AccC Basal machinery
accD acetyl-CoA carboxyltransferase, β subunit Basal machinery
aceA isocitrate lyase monomer 1.11
aceB malate synthase A 1.11
aceE subunit of E1p component of pyruvate dehydrogenase complex 1.43
aceF AceF 1.43
aceK AceK 1.11
ackA acetate kinase Basal machinery
acnA aconitate hydratase 1 Intermodular
acnB bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase 1.16
acpP apo-[acyl carrier protein] Basal machinery
acpS AcpS Basal machinery
acrA AcrAB-TolC multidrug efflux system - membrane fusion protein Intermodular
acrB AcrAB-TolC multidrug efflux system - permease subunit Intermodular
acrD AcrAD-TolC multidrug efflux system - permease subunit 1.1
acrE AcrEF-TolC multidrug efflux system - membrane fusion protein Basal machinery
acrF AcrEF-TolC multidrug efflux system - permease subunit Basal machinery
acrR AcrR DNA-binding transcriptional repressor 1.1
acs acetyl-CoA synthetase (AMP-forming) Basal machinery
actP -- 1.1
ada Ada DNA-binding transcriptional dual regulator 29
add adenosine deaminase Basal machinery
adeD cryptic adenine deaminase monomer Basal machinery
adeQ adenine transporter 1.12
adhE AdhE 1.12
adhP ethanol dehydrogenase / alcohol dehydrogenase Basal machinery
adiA Adi 1.1
adiC AdiC 1.1
adiY AdiY DNA-binding transcriptional activator 1.1
adrA predicted diguanylate cyclase 1.1
aer aerotaxis sensor receptor, flavoprotein Basal machinery
agaA predicted truncated N-acetylgalactosamine-6-phosphate deacetylase 5
agaB galactosamine PTS permease (cryptic) - AgaB subunit 5
agaC galactosamine PTS permease (cryptic) - AgaC subunit 5
agaD galactosamine PTS permease (cryptic) - AgaD subunit 5
agaI predicted galactosamine-6-phosphate isomerase 5
agaR AgaR DNA-binding transcriptional repressor 5
agaS putative tagatose-6-phosphate aldose/ketose isomerase 5
agaV N-acetyl-D-galactosamine PTS permease (cryptic) - AgaV subunit 5
agaW N-acetyl-D-galactosamine PTS permease (cryptic) - AgaW subunit (pseudogene) 5
agp Agp Basal machinery
ahpC alkyl hydroperoxide reductase, AhpC component Intermodular
ahpF AhpF component Intermodular
ahr aldehyde reductase, NADPH-dependent Basal machinery
aidB AidB 29
ais protein induced by aluminum Basal machinery
alaA glutamate-pyruvate aminotransferase Basal machinery
alaC glutamate-pyruvate aminotransferase 1.19
alaE L-alanine exporter Basal machinery
alaS alanyl-tRNA synthetase Basal machinery
aldA AldA 1.4
aldB -- Basal machinery
alkA 3-methyl-adenine DNA glycosylase II, inducible 29
alkB AlkB repair system for alkylated DNA and RNA 29
allA ureidoglycolate lyase 3
allB allantoinase monomer 3
allC allantoate amidohydrolase monomer 3
allD ureidoglycolate dehydrogenase 3
allE S-ureidoglycine aminohydrolase 3
allR AllR DNA-binding transcriptional repressor 3
allS AllS transcriptional activator 3
alsA D-allose ABC transporter - ATP binding subunit 20
alsB D-allose ABC transporter - periplasmic binding protein 20
alsC D-allose ABC transporter - membrane subunit 20
alsE allulose-6-phosphate 3-epimerase 20
alsK D-allose kinase Basal machinery
alx predicted membrane-bound redox modulator that is induced by high pH Basal machinery
amiA N-acetylmuramoyl-L-alanine amidase 1 Basal machinery
amiB N-acetylmuramoyl-L-alanine amidase 2 Basal machinery
amiC N-acetylmuramyl-L-alanine amidase Basal machinery
amn Amn 1.4
ampC β-lactamase; penicillin resistance 1.1
ampD N-acetyl-anhydromuramyl-L-alanine-amidase Basal machinery
ampE predicted inner membrane protein Basal machinery
ampG muropeptide:H+ symporter Basal machinery
amtB AmtB 1.1
amyA α-amylase Basal machinery
anmK anhydro-N-acetylmuramic acid kinase Basal machinery
ansB AnsB Basal machinery
ansP L-asparagine transporter Basal machinery
apaG hypothetical protein Basal machinery
apaH diadenosine tetraphosphatase Basal machinery
apbE predicted thiamine biosynthesis lipoprotein Basal machinery
appA AppA 1.6
appB cytochrome bd-II terminal oxidase subunit II 1.6
appC cytochrome bd-II terminal oxidase subunit I 1.6
appX small outer membrane protein 1.6
appY AppY DNA-binding transcriptional activator 1.6
apt adenine phosphoribosyltransferase Basal machinery
aqpZ AqpZ Basal machinery
araA L-arabinose isomerase monomer 2
araB L-ribulokinase monomer 2
araC AraC 2
araD L-ribulose 5-phosphate 4-epimerase monomer 2
araE arabinose:H+ symporter 2
araF arabinose ABC transporter - periplasmic binding protein 2
araG arabinose ABC transporter - ATP binding subunit 2
araH arabinose ABC transporter - membrane subunit 2
araJ putative transport protein 2
arcA ArcA transcriptional dual regulator Global regulator
arfA ribosome rescue factor Basal machinery
arfB peptidyl-tRNA hydrolase, ribosome rescue factor Basal machinery
argA ArgA 1.1
argB acetylglutamate kinase monomer 1.1
argC N-acetylglutamylphosphate reductase 1.1
argD ArgD 1.1
argE ArgE 1.1
argF ArgF 1.1
argG ArgG 1.1
argH argininosuccinate lyase 1.1
argI ArgI 1.1
argO arginine export protein 1.4
argP ArgP transcriptional activator 1.4
argR ArgR 1.1
argS arginyl-tRNA synthetase Basal machinery
argT lysine / arginine / ornithine ABC transporter - periplasmic binding protein Intermodular
ariR regulator of acid resistance, influenced by indole 22
aroA 3-phosphoshikimate-1-carboxyvinyltransferase Basal machinery
aroB 3-dehydroquinate synthase Basal machinery
aroD AroD Basal machinery
aroF AroF 1.52
aroG AroG Intermodular
aroH AroH 1.45
aroK shikimate kinase I Basal machinery
aroL shikimate kinase II Intermodular
aroM conserved protein Intermodular
aroP aromatic amino acid:H+ symporter AroP 1.52
arpA regulator of acetyl CoA synthetase Basal machinery
arsB ArsB 45
arsC arsenate reductase 45
arsR ArsR 45
artI periplasmic binding protein ArtI 1.1
artJ L-arginine ABC transporter - periplasmic binding protein 1.1
artM L-arginine ABC transporter - membrane subunit 1.1
artP L-arginine ABC transporter - ATP binding subunit 1.1
artQ L-arginine ABC transporter - membrane subunit 1.1
ascB 6-phospho-β-glucosidase; cryptic 1.17
ascF AscF 1.17
ascG AscG DNA-binding transcriptional repressor 1.17
aslB predicted anaerobic sulfatase maturation enzyme 1.1
asnA AsnA 1.1
asnB AsnB 1.1
asnC AsnC 1.1
aspA AspA Basal machinery
aspC AspC Basal machinery
asr acid shock protein Intermodular
astA arginine succinyltransferase 1.1
astB -- 1.1
astC succinylornithine transaminase 1.1
astD aldehyde dehydrogenase 1.1
astE succinylglutamate desuccinylase 1.1
atoA acetyl-CoA:acetoacetyl-CoA transferase, β subunit 27
atoB AtoB 27
atoC AtoC transcriptional activator; Az protein inhibitor of ODC 27
atoD acetyl-CoA:acetoacetyl-CoA transferase, α subunit 27
atoE predicted short chain fatty acid transporter 27
atpA ATP synthase F1 complex - alpha subunit Basal machinery
atpB ATP synthase F0 complex - a subunit Basal machinery
atpC ATP synthase F1 complex - epsilon subunit Basal machinery
atpD ATP synthase F1 complex - beta subunit Basal machinery
atpE -- Basal machinery
atpF ATP synthase F0 complex - b subunit Basal machinery
atpG ATP synthase F1 complex - gamma subunit Basal machinery
atpH ATP synthase F1 complex - delta subunit Basal machinery
atpI AtpI Basal machinery
avtA valine-pyruvate aminotransferase Basal machinery
azoR NADH:quinone oxidoreductase, FMN-dependent Basal machinery
azuC small membrane protein Basal machinery
b0201 -- Basal machinery
b0202 -- Basal machinery
b0203 -- Basal machinery
b0204 -- Basal machinery
b0205 -- Basal machinery
b0216 -- Basal machinery
b0244 -- Basal machinery
b0455 -- 51
b0536 -- Basal machinery
b0664 -- Basal machinery
b0665 -- Basal machinery
b0666 -- Basal machinery
b0668 -- Basal machinery
b0670 -- Basal machinery
b0672 -- Basal machinery
b0673 -- Basal machinery
b0743 -- Basal machinery
b0744 -- Basal machinery
b0745 -- Basal machinery
b0883 -- Basal machinery
b0971 -- Basal machinery
b1016 -- 1.1
b1032 -- Basal machinery
b1230 -- Basal machinery
b1231 -- Basal machinery
b1574 -- 1.29
b1665 -- Basal machinery
b1666 -- Basal machinery
b1692 -- Basal machinery
b1909 -- Basal machinery
b1911 -- Basal machinery
b1954 -- 1.1
b1975 -- Basal machinery
b1977 -- Basal machinery
b1986 -- Basal machinery
b1989 -- Basal machinery
b2083 -- 1.1
b2189 -- Basal machinery
b2348 -- Basal machinery
b2396 -- Basal machinery
b2397 -- Basal machinery
b2401 -- Basal machinery
b2402 -- Basal machinery
b2403 -- Basal machinery
b2404 -- Basal machinery
b2588 -- Basal machinery
b2589 -- Basal machinery
b2590 -- Basal machinery
b2591 -- Basal machinery
b2621 -- Basal machinery
b2640 -- Basal machinery
b2691 -- Basal machinery
b2692 -- Basal machinery
b2693 -- Basal machinery
b2694 -- Basal machinery
b2695 -- Basal machinery
b2814 -- Basal machinery
b2815 -- Basal machinery
b2816 -- Basal machinery
b2864 -- Basal machinery
b2911 -- Basal machinery
b2967 -- Basal machinery
b3069 -- Basal machinery
b3123 -- 7
b3171 -- 1.1
b3174 -- Basal machinery
b3217 -- Basal machinery
b3272 -- Basal machinery
b3273 -- Basal machinery
b3274 -- Basal machinery
b3275 -- Basal machinery
b3276 -- Basal machinery
b3277 -- Basal machinery
b3278 -- Basal machinery
b3545 -- Basal machinery
b3756 -- Basal machinery
b3757 -- Basal machinery
b3758 -- Basal machinery
b3759 -- Basal machinery
b3760 -- Basal machinery
b3761 -- Basal machinery
b3796 -- Basal machinery
b3797 -- Basal machinery
b3798 -- Basal machinery
b3799 -- Basal machinery
b3851 -- Basal machinery
b3852 -- Basal machinery
b3853 -- Basal machinery
b3854 -- Basal machinery
b3855 -- Basal machinery
b3864 -- 1.62
b3968 -- Basal machinery
b3969 -- Basal machinery
b3970 -- Basal machinery
b3971 -- Basal machinery
b3976 -- Basal machinery
b3977 -- Basal machinery
b3978 -- Basal machinery
b3979 -- Basal machinery
b4007 -- Basal machinery
b4008 -- Basal machinery
b4009 -- Basal machinery
b4010 -- Basal machinery
b4134 -- Basal machinery
b4270 -- Basal machinery
b4368 -- Basal machinery
b4369 -- Basal machinery
b4370 -- Basal machinery
b4408 -- 44
b4413 -- 56
b4414 -- Basal machinery
b4417 -- 1.60
b4420 -- 52
b4422 -- 61
b4423 -- 71
b4424 -- 71
b4426 -- 1.1
b4427 -- 1.63
b4429 -- 70
b4430 -- Basal machinery
b4431 -- 1.1
b4432 -- 72
b4433 -- 72
b4436 -- 63
b4437 -- 64
b4438 -- 1.22
b4439 -- 1.1
b4440 -- 1.2
b4441 -- 1.7
b4443 -- 1.12
b4444 -- 1.1
b4445 -- 1.1
b4446 -- 65
b4447 -- 66
b4450 -- Basal machinery
b4451 -- 1.16
b4452 -- 1.1
b4454 -- 53
b4456 -- 1.7
b4457 -- 44
b4458 -- 1.3
b4577 -- 1.19
b4597 -- 24
b4603 -- 1.26
b4608 -- 69
b4609 -- 1.27
b4611 -- 62
b4616 -- Basal machinery
b4624 -- Basal machinery
b4625 -- 1.55
b4698 -- 1.1
b4699 -- 1.53
b4704 -- Basal machinery
b4707 -- Basal machinery
baeR BaeR transcriptional regulator 1.1
baeS BaeS sensory histidine kinase 1.1
bamA Outer Membrane Protein Assembly Complex - BamA subunit Basal machinery
bamB Outer Membrane Protein Assembly Complex - BamB subunit Basal machinery
bamC Outer Membrane Protein Assembly Complex - BamC subunit Basal machinery
bamD Outer Membrane Protein Assembly Complex - BamD subunit Basal machinery
bamE Outer Membrane Protein Assembly Complex - BamE subunit 1.1
basR BasR transcriptional regulator 1.1
basS BasS sensory histidine kinase Basal machinery
bax conserved protein Basal machinery
bcp thiol peroxidase Basal machinery
bcsB cellulose synthase, periplasmic subunit Basal machinery
bcsE c-di-GMP-binding protein Basal machinery
bcsF predicted protein Basal machinery
bcsG predicted inner membrane protein Basal machinery
bcsZ endo-1,4-D-glucanase Basal machinery
bdcA c-di-GMP binding protein involved in biofilm dispersal Basal machinery
bdcR predicted transcriptional regulator Basal machinery
bdm biofilm-dependent modulation protein 1.1
bepA chaperone/protease involved in the maintenance of OM integrity Basal machinery
betA choline dehydrogenase 32
betB BetB 32
betI BetI DNA-binding transcriptional repressor 32
betT choline:H+ symporter 32
bfr bacterioferritin monomer 1.16
bglB 6-phospho-β-glucosidase B; cryptic 1.1
bglF BglF 1.1
bglG BglG transcriptional antiterminator (monomer) 1.1
bglJ BglJ DNA-binding transcriptional regulator 1.1
bglX β-D-glucoside glucohydrolase, periplasmic Basal machinery
bhsA outer membrane protein involved in copper permeability, stress resistance and biofilm formation 60
bioA adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer 18
bioB biotin synthase monomer 18
bioC malonyl-[acp] methyltransferase 18
bioD1 -- 18
bioF 8-amino-7-oxononanoate synthase monomer 18
birA bifunctional biotin-[acetyl-CoA-carboxylase] ligase and transcriptional repressor 18
bisC biotin sulfoxide reductase Basal machinery
blc Blc outer membrane lipoprotein (lipocalin) Basal machinery
bluF blue light-responsive regulator of BluR Basal machinery
bluR BluR DNA-binding transcriptional repressor 22
bolA BolA DNA-binding transcriptional dual regulator 1.1
borD bacteriophage lambda Bor protein homolog 1.1
bssR regulator of biofilm formation Basal machinery
bssS regulator of biofilm formation Basal machinery
btuB vitamin B12 / E colicin / bacteriophage BF23 outer membrane porin BtuB 1.1
btuF vitamin B12 ABC transporter - periplasmic binding protein Basal machinery
C0343 C0343 Basal machinery
C0614 C0614 1.2
cadA CadA 1.1
cadB cadaverine:H+ symporter/lysine:cadaverine antiporter 1.1
cadC CadC DNA-binding transcriptional activator 1.1
caiA crotonobetainyl-CoA reductase 6
caiB CaiB monomer 6
caiC carnitine-CoA ligase 6
caiD crotonobetainyl-CoA hydratase 6
caiE predicted acyl transferase 6
caiF CaiF 6
caiT -- 6
can carbonic anhydrase 2 monomer Basal machinery
carA carbamoyl phosphate synthetase, α chain Intermodular
carB carbamoyl phosphate synthetase, β chain Intermodular
cas1 multifunctional nuclease 1.1
cas2 predicted endoribonuclease 1.1
casA Cascade subunit A 1.1
casB Cascade subunit B 1.1
casC Cascade subunit C 1.1
casD Cascade subunit D Intermodular
casE crRNA endonuclease 1.1
cbl Cbl DNA-binding transcriptional activator 1.1
cbpA CbpA monomer Basal machinery
cbpM chaperone modulator protein CbpM Basal machinery
cbrA colicin M resistance protein Basal machinery
cbrB predicted inner membrane protein Basal machinery
cbrC colicin E2 tolerance protein Basal machinery
cca fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase Basal machinery
ccmA protoheme IX ABC transporter - ATP binding subunit Intermodular
ccmB protoheme IX ABC transporter - membrane subunit CcmB Intermodular
ccmC protoheme IX ABC transporter - membrane subunit CcmC Intermodular
ccmD protoheme IX ABC transporter - membrane subunit CcmD Intermodular
ccmE membrane anchored periplasmic heme chaperone CcmE Intermodular
ccmF cytochrome c-type biogenesis protein Intermodular
ccmH CcmH Intermodular
cdaR CdaR DNA-binding transcriptional activator 7
cdd Cdd 1.39
cdsA CDP-diglyceride synthetase Basal machinery
cedA cell division modulator Basal machinery
cfa cyclopropane fatty acyl phospholipid synthase Basal machinery
chaC predicted cation transport protein Basal machinery
chbA chitobiose PTS permease - ChbA subunit 1.5
chbB chitobiose PTS permease - ChbB subunit 1.5
chbC chitobiose PTS permease - ChbC subunit 1.5
chbF monoacetylchitobiose-6-phosphate hydrolase 1.5
chbG chito-oligosaccharide mono-deacetylase 1.5
chbR ChbR DNA-binding transcriptional dual regulator 1.5
cheA CheA(S) 1.1
cheB CheB Basal machinery
cheR chemotaxis protein methyltransferase/chemotaxis protein methyltransferase/chemotaxis protein methyltransferase/chemotaxis protein methyltransferase/chemotaxis protein methyltransferase Basal machinery
cheW CheW 1.1
cheY chemotaxis regulator transmitting signal to flagellar motor component Basal machinery
cheZ CheZ Basal machinery
chiA endochitinase Basal machinery
chiP chitobiose outer membrane porin Intermodular
chiX MicM 1.34
cho endonuclease of nucleotide excision repair 1.14
chpB ChpB toxin of the ChpB-ChpS toxin-antitoxin system Basal machinery
chpS ChpS antitoxin of the ChpB-ChpS toxin-antitoxin system Basal machinery
cirA outer membrane receptor involved in uptake of ferric dihyroxybenzoylserine 1.1
citC citrate lyase synthetase 1.6
citD citrate lyase, acyl carrier γ subunit 1.6
citE citrate lyase, citryl-ACP lyase β subunit 1.6
citF citrate lyase, citrate-ACP transferase α subunit 1.6
citG triphosphoribosyl-dephospho-CoA synthase 1.6
citT citrate:succinate antiporter Basal machinery
citX apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 1.6
clcA -- Basal machinery
clpA ClpA Basal machinery
clpB ClpB chaperone Intermodular
clpP ClpP Basal machinery
clpS specificity factor for ClpA-ClpP chaperone-protease complex Basal machinery
clpX ClpX Basal machinery
clsC cardiolipin synthase 3 Basal machinery
cmk cytidylate kinase Basal machinery
cnu H-NS- and StpA-binding protein Basal machinery
coaD pantetheine-phosphate adenylyltransferase monomer Basal machinery
cobB protein-lysine deacetylase and desuccinylase Basal machinery
cobC predicted adenosylcobalamin phosphatase/α-ribazole phosphatase Basal machinery
cobS cobalamin 5'-phosphate synthase Basal machinery
cobT CobT Basal machinery
cobU CobU Basal machinery
codA -- Intermodular
codB cytosine transporter Intermodular
comR ComR DNA-binding transcriptional repressor 60
copA Cu+ efflux ATPase 1.24
corA Ni2+ / Co2+ / Mg2+ transporter Basal machinery
cpdB 2'3' cyclic nucleotide phosphodiesterase/3' nucleotidase Basal machinery
cpxA CpxA sensory histidine kinase 1.1
cpxP regulator of the Cpx response and possible chaperone involved in resistance to extracytoplasmic stress 1.1
cpxR CpxR transcriptional dual regulator 1.1
cra Cra DNA-binding transcriptional dual regulator Global regulator
crcB F- efflux transporter / involved in resistance to camphor-induced chromosome decondensation Basal machinery
creA conserved protein 1.5
creB CreB transcriptional regulator 1.5
creC CreC 1.5
creD predicted inner membrane protein 1.5
crfC Clamp-binding sister replication fork colocalization protein Basal machinery
crl RNA polymerase holoenzyme assembly factor Crl Basal machinery
crp CRP transcriptional dual regulator Global regulator
crr Enzyme IIAGlc; Crr Intermodular
csdA cysteine sulfinate desulfinase Basal machinery
csdE CSD sulfur transfer protein Basal machinery
csgA curlin, major subunit 1.1
csgB curlin, minor subunit 1.1
csgC putative curli production protein 1.1
csgD CsgD DNA-binding transcriptional dual regulator 1.1
csgE curli transport specificity factor 1.1
csgF curli assembly component 1.1
csgG curli secretion channel 1.1
csiD predicted protein 1.54
csiE stationary phase inducible protein Basal machinery
csiR CsiR DNA-binding transcriptional repressor 1.54
cspA CspA DNA-binding transcriptional activator 57
cspC stress protein, member of the CspA family Basal machinery
cspD DNA replication inhibitor 36
cspE transcription antiterminator and regulator of RNA stability 1.14
cspF Qin prophage; cold shock protein Basal machinery
cspH stress protein, member of the CspA family Basal machinery
cspI Qin prophage; cold shock protein 1.1
csrA carbon storage regulator; pleiotropic regulatory protein for carbon source metabolism 44
csrD regulator of CsrB and CsrC decay Basal machinery
cstA peptide transporter induced by carbon starvation Basal machinery
cueO multicopper oxidase with role in copper homeostasis Intermodular
cueR CueR transcriptional dual regulator 1.24
curA NADPH-dependent curcumin/dihydrocurcumin reductase subunit Basal machinery
cusA copper / silver efflux system - membrane subunit 21
cusB copper / silver efflux system - membrane fusion protein 21
cusC copper / silver efflux system - outer membrane porin 21
cusF copper / silver efflux system - periplasmic binding protein and metallochaperone 21
cusR CusR 21
cusS CusS sensory histidine kinase 21
cutA copper binding protein CutA Basal machinery
cutC copper homeostasis protein Basal machinery
cvpA membrane protein required for colicin V production 1.32
cvrA YcgO CPA1 Transporter Basal machinery
cyaA adenylate cyclase Basal machinery
cyaY frataxin, iron-binding and oxidizing protein Basal machinery
cybB cytochrome b561 Basal machinery
cycA serine / alanine / glycine / cycloserine:H+symporter 1.12
cydA cytochrome bd-I terminal oxidase subunit I Intermodular
cydB cytochrome bd-I terminal oxidase subunit II 1.31
cydC glutathione / L-cysteine efflux transporter - CydC subunit Basal machinery
cydD glutathione / L-cysteine efflux transporter - CydD subunit 1.53
cydX cytochrome bd-I terminal oxidase - CydX subunit Basal machinery
cynR CynR DNA-binding transcriptional repressor 30
cynS cyanase monomer 30
cynT carbonic anhydrase monomer 30
cynX cyanate transporter 30
cyoA cytochrome bo terminal oxidase subunit II Intermodular
cyoB cytochrome bo terminal oxidase subunit I Intermodular
cyoC cytochrome bo terminal oxidase subunit III Intermodular
cyoD cytochrome bo terminal oxidase subunit IV Intermodular
cyoE heme O synthase Intermodular
cysA sulfate / thiosulfate ABC transporter - ATP binding subunit 1.1
cysB CysB 1.1
cysC CysC 1.1
cysD sulfate adenylyltransferase, CysD subunit Intermodular
cysE serine acetyltransferase monomer 1.16
cysG CysG 1.33
cysH CysH Intermodular
cysI sulfite reductase, hemoprotein subunit 1.1
cysJ sulfite reductase, flavoprotein subunit 1.1
cysK O-acetylserine sulfhydrylase A 1.1
cysM CysM 1.1
cysN sulfate adenylyltransferase, CysN subunit 1.1
cysP sulfate / thiosulfate ABC transporter - periplasmic binding protein CysP 1.1
cysT tRNAcysT Basal machinery
cysU sulfate / thiosulfate ABC transporter - membrane subunit 1.1
cysW sulfate / thiosulfate ABC transporter - membrane subunit 1.1
cysZ sulfate:H+ symporter Basal machinery
cytR CytR 1.39
dacA D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 Basal machinery
dacB meso-diaminopimelic acid-D-alanyl endopeptidase / D-alanyl-D-alanine carboxypeptidase Basal machinery
dacC penicillin-binding protein 6 1.1
dadA D-amino acid dehydrogenase Basal machinery
dadX -- Basal machinery
dam DNA adenine methyltransferase Basal machinery
damX cell division protein DamX Basal machinery
dapA 4-hydroxy-tetrahydrodipicolinate synthase Basal machinery
dapB 4-hydroxy-tetrahydrodipicolinate reductase 1.4
dapD tetrahydrodipicolinate succinylase 1.4
dapE N-succinyl-L-diaminopimelate desuccinylase subunit Basal machinery
dapF -- Basal machinery
dbpA ATP-dependent RNA helicase, specific for 23S rRNA Basal machinery
dcp dipeptidyl carboxypeptidase II Basal machinery
dcrB periplasmic protein involved in bacteriophage sensitivity Basal machinery
dctA C4 dicarboxylate / orotate:H+ symporter 1.6
dctR predicted DNA-binding transcriptional regulator 1.1
dcuA dicarboxylate transporter DcuA Basal machinery
dcuB dicarboxylate transporter DcuB 1.6
dcuC dicarboxylate transporter DcuC Basal machinery
dcuD YhcL DcuC transporter 1.1
dcuR DcuR transcriptional activator 1.6
dcuS DcuS sensory histidine kinase Basal machinery
ddlB D-alanine-D-alanine ligase B Intermodular
ddpA YddS 1.1
ddpB YddR 1.1
ddpC YddQ 1.1
ddpD YddP 1.1
ddpF YddO 1.1
ddpX D-Ala-D-Ala dipeptidase 1.1
deaD DeaD, DEAD-box RNA helicase Basal machinery
dedA conserved inner membrane protein Basal machinery
dedD cell division protein DedD Basal machinery
def peptide deformylase Basal machinery
degP DegP 1.1
deoA DeoA Intermodular
deoB phosphopentomutase Intermodular
deoC deoxyribose-phosphate aldolase Intermodular
deoD purine nucleoside phosphorylase Intermodular
deoR DeoR DNA-binding transcriptional repressor 1.30
der 50S ribosomal subunit stability factor Basal machinery
dgcZ diguanylate cyclase 1.1
dgkA DgkA 1.1
dhaK dihydroxyacetone kinase subunit K 33
dhaL dihydroxyacetone kinase subunit L 33
dhaM dihydroxyacetone kinase subunit M 33
dhaR DhaR DNA-binding transcriptional dual regulator 33
dicA DicA DNA-binding transcriptional dual regulator 16
dicB Qin prophage; cell division inhibition protein 16
dinB DNA polymerase IV (Y-family DNA polymerase; translesion DNA synthesis) 1.14
dinD DNA-damage-inducible protein 1.14
dinF DinF MATE Transporter 1.14
dinG ATP-dependent helicase 1.14
dinI DNA damage-inducible protein I Intermodular
dinJ DinJ antitoxin of YafQ-DinJ toxin-antitoxin system and DNA-binding transcriptional repressor 1.14
dinQ toxic inner membrane peptide DinQ 1.14
djlA chaperone with DnaK Basal machinery
djlB predicted chaperone Basal machinery
djlC Hsc56, co-chaperone of Hsc62 Basal machinery
dkgA methylglyoxal reductase/isobutyraldehyde reductase/β-keto ester reductase/2,5-diketo-D-gluconate reductase 38
dkgB methylglyoxal reductase/4-nitrobenzaldehyde reductase/2,5-diketo-D-gluconate reductase Basal machinery
dksA RNA polymerase-binding transcription factor DksA Basal machinery
dld D-lactate dehydrogenase 1.1
dmlA D-malate / 3-isopropylmalate dehydrogenase (decarboxylating) Basal machinery
dmlR DmlR DNA-binding transcriptional regulator Basal machinery
dmsA dimethyl sulfoxide reductase, chain A 1.35
dmsB dimethyl sulfoxide reductase, chain B 1.35
dmsC dimethyl sulfoxide reductase, chain C 1.35
dmsD DMS reductase maturation protein Basal machinery
dnaA chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator 1.4
dnaE DNA polymerase III, α subunit Basal machinery
dnaG DNA primase 1.14
dnaJ chaperone protein DnaJ Basal machinery
dnaK chaperone protein DnaK 1.12
dnaN DnaN 1.4
dosP c-di-GMP phosphodiesterase, heme-regulated Basal machinery
dpiA DpiA 1.6
dpiB DpiB sensory histidine kinase 1.6
dppA dipeptide ABC transporter - periplasmic binding protein 1.12
dppB dipeptide ABC transporter - putative membrane subunit 1.1
dppC dipeptide ABC transporter - putative membrane subunit Basal machinery
dppD dipeptide ABC transporter - putative ATP binding subunit Basal machinery
dppF dipeptide ABC transporter - putative ABC binding subunit 1.1
dps stationary phase nucleoid protein that sequesters iron and protects DNA from damage Intermodular
dsbA protein disulfide oxidoreductase - DsbAreduced 1.1
dsbB protein disulfide oxidoreductase - DsbBreduced Basal machinery
dsbC DsbC monomer 1.1
dsbE -- Intermodular
dsbG DsbGreduced 1.3
dsdA D-serine ammonia-lyase 40
dsdC DsdC DNA-binding transcriptional dual regulator 40
dsdX D-serine transporter 40
dsrB predicted protein Basal machinery
dtpA tripeptide / dipeptide:H+ symporter DtpA 1.1
dtpC dipeptide / tripeptide:H+ symporter DptC Basal machinery
dtpD dipeptide:H+ symporter DtpD Basal machinery
dusA tRNA-dihydrouridine synthase A Basal machinery
dusB tRNA-dihydrouridine synthase B Basal machinery
dut Dut Basal machinery
dxr Dxr Basal machinery
dxs Dxs Basal machinery
ebgA evolved β-D-galactosidase, α subunit; cryptic gene 47
ebgC evolved β-D-galactosidase, β subunit; cryptic gene 47
ebgR EbgR DNA-binding transcriptional repressor 47
ecnB entericidin B 1.1
eco ecotin monomer; serine protease inhibitor Basal machinery
ecpA E. coli common pilus - major subunit; cryptic 1.1
ecpR MatA DNA-binding transcriptional dual regulator 1.1
eda Eda Intermodular
edd phosphogluconate dehydratase Intermodular
efeB heme-containing peroxidase/deferrochelatase Basal machinery
efeO conserved periplasmic protein Basal machinery
efeU_2 -- 1.1
efp protein chain elongation factor EF-P Basal machinery
elaA predicted acyltransferase with acyl-CoA N-acyltransferase domain Basal machinery
elaD deubiquitinase Basal machinery
elfA fimbrial-like adhesin protein Basal machinery
elfC predicted outer membrane usher protein Basal machinery
elfD predicted periplasmic pilin chaperone Basal machinery
elfG predicted fimbrial-like adhesin protein Basal machinery
emrA EmrAB-TolC multidrug efflux transport system - membrane fusion protein 1.44
emrB EmrAB-TolC multidrug efflux transport system - membrane subunit 1.44
emrD multidrug efflux transporter EmrD Basal machinery
emrK EmrKY-TolC multidrug efflux transport system - membrane fusion protein 1.1
emrY EmrKY putative multidrug efflux transporter - membrane subunit Intermodular
emtA lytic murein transglycosylase E Basal machinery
eno Eno Basal machinery
entA EntA Basal machinery
entB EntB monomer Basal machinery
entC isochorismate synthase 1 1.16
entD phosphopantetheinyl transferase/phosphopantetheinyl transferase Basal machinery
entE EntE Basal machinery
entF apo-serine activating enzyme Basal machinery
entH proofreading thioesterase in enterobactin biosynthesis Basal machinery
entS enterobactin efflux transporter EntS Basal machinery
envC EnvC divisome associated factor, activator of peptidoglycan hydrolases Basal machinery
envR EnvR DNA-binding transcriptional repressor 1.46
envY EnvY DNA-binding transcriptional activator 1.21
envZ EnvZ Basal machinery
epd Epd Basal machinery
epmB lysine 2,3-aminomutase Basal machinery
eptB phosphoethanolamine transferase EptB 1.1
eptC phosphoethanolamine transferase EptC Basal machinery
era GTP-binding protein Basal machinery
erfK L,D-transpeptidase ErfK Basal machinery
erpA essential respiratory protein A 1.16
essD DLP12 prophage; predicted phage lysis protein 1.1
etk autophosphorylating protein tyrosine kinase Basal machinery
ettA energy-dependent translational throttle protein Basal machinery
evgA EvgA transcriptional regulator 1.1
evgS EvgS sensory histidine kinase 1.1
exbB TonB energy transducing system - ExbB subunit Basal machinery
exbD tonB energy transducing system - ExbD subunit Basal machinery
exoX exonuclease X Basal machinery
exuR ExuR DNA-binding transcriptional repressor 1.9
exuT hexuronate transporter Intermodular
fabA FabA Intermodular
fabB FabB Intermodular
fabF FabF Basal machinery
fabR FabR DNA-binding transcriptional repressor 1.57
fabZ FabZ 1.1
fadA 3-ketoacyl-CoA thiolase 1.11
fadB dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase 1.11
fadD FadD 1.11
fadE acyl-CoA dehydrogenase 1.11
fadH 2,4-dienoyl-CoA reductase 1.11
fadI FadI monomer 1.11
fadJ FadJ monomer 1.11
fadL long-chain fatty acid outer membrane porin; bacteriophage T2 receptor Intermodular
fadM thioesterase III 1.11
fadR FadR DNA-binding transcriptional dual regulator 1.11
fbaA fructose bisphosphate aldolase monomer Basal machinery
fbaB fructose bisphosphate aldolase monomer Basal machinery
fdhE formate dehydrogenase formation protein Basal machinery
fdhF formate dehydrogenase H Intermodular
fdnG formate dehydrogenase N, α subunit 1.33
fdnH formate dehydrogenase N, β subunit 1.33
fdnI formate dehydrogenase N, γ subunit 1.33
fdoG formate dehydrogenase-O, α subunit 1.16
fdrA predicted acyl-CoA synthetase with NAD(P)-binding Rossmann-fold domain Basal machinery
fdx reduced ferredoxin Basal machinery
feaB FeaB 75
feaR FeaR DNA-binding transcriptional activator 75
fecA ferric citrate outer membrane porin FecA Intermodular
fecB ferric dicitrate ABC transporter - periplasmic binding protein Intermodular
fecC ferric dicitrate ABC transporter - membrane subunit Intermodular
fecD ferric dicitrate ABC transporter - membrane subunit Intermodular
fecE ferric dicitrate ABC transporter - ATP binding subunit Intermodular
fecI RNA polymerase, sigma 19 factor 1.50
fecR regulator for fec operon, periplasmic Basal machinery
feoA ferrous iron transport protein A 1.5
feoB Fe2+ transporter FeoB 1.5
feoC predicted DNA-binding transcriptional regulator 1.5
fepA ferric enterobactin / colicin B / colicin D outer membrane porin FepA 1.1
fepB ferric enterobactin ABC transporter - periplasmic binding protein 1.1
fepC ferric enterobactin ABC transporter - ATP binding subunit Basal machinery
fepD ferric enterobactin ABC transporter - membrane subunit Basal machinery
fepE ferric enterobactin (enterochelin) transport Basal machinery
fepG ferric enterobactin ABC transporter - membrane subunit Basal machinery
fes enterochelin esterase Basal machinery
fetA ABC transporter with a role in iron homeostasis - ATP-binding subunit Basal machinery
fetB ABC transporter with a role in iron homeostasis - membrane subunit Basal machinery
ffh protein component of the signal recognition particle (SRP) 51
fhlA FhlA transcriptional activator 1.3
fhuA ferrichrome / phage / antibiotic outer membrane porin FhuA Basal machinery
fhuB iron (III) hydroxamate ABC transporter - membrane subunit Basal machinery
fhuC iron (III) hydroxamate ABC transporter - ATP binding subunit Basal machinery
fhuD iron (III) hydroxamate ABC transporter - periplasmic binding protein Basal machinery
fhuE ferric coprogen outer membrane porin FhuE Basal machinery
fhuF hydroxamate siderophore iron reductase 1.3
fic stationary-phase protein with possible role in p-aminobenzoate or folate biosynthesis Basal machinery
fieF FieF Basal machinery
fimA major type 1 subunit fimbrin (pilin) 1.1
fimB regulator for fimA Intermodular
fimC periplasmic chaperone, required for type 1 fimbriae Basal machinery
fimD FimD monomer Basal machinery
fimE regulator for fimA 59
fimF fimbrial morphology Basal machinery
fimG fimbrial morphology Basal machinery
fimH minor fimbrial subunit, D-mannose specific adhesin Basal machinery
fimI fimbrial protein Basal machinery
fimZ FimZ transcriptional regulator 1.12
fis Fis Global regulator
fiu putative outer membrane receptor for iron transport Basal machinery
fixA predicted elecron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain 6
fixB predicted electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like 6
fixC flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism 6
fixX putative ferredoxin possibly involved in anaerobic carnitine metabolism 6
fkpA peptidyl-prolyl cis-trans isomerase; in protein folding Basal machinery
fkpB peptidyl-prolyl cis-trans isomerase Basal machinery
fldA flavodoxin 1 1.1
fldB flavodoxin 2 1.1
flgA flagellar biosynthesis; assembly of basal-body periplasmic P ring Basal machinery
flgB flagellar basal-body rod protein FlgB Basal machinery
flgC flagellar basal-body rod protein FlgC Basal machinery
flgD flagellar biosynthesis, initiation of hook assembly Basal machinery
flgE flagellar hook protein FlgE Basal machinery
flgF flagellar basal-body rod protein FlgF Basal machinery
flgG flagellar basal-body rod protein FlgG Basal machinery
flgH flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein Basal machinery
flgI flagellar P-ring protein FlgI Basal machinery
flgJ FlgJ Basal machinery
flgK flagellar biosynthesis, hook-filament junction protein 1 Basal machinery
flgL flagellar biosynthesis; hook-filament junction protein Basal machinery
flgM anti-sigma factor for FliA (σ28) Basal machinery
flgN flagellar biosynthesis protein FlgN Basal machinery
flhA flagellar biosynthesis protein FlhA Basal machinery
flhB flagellar biosynthesis protein FlhB Basal machinery
flhC FlhC Global regulator
flhD FlhD Global regulator
flhE flagellar protein Basal machinery
fliA RNA polymerase, sigma 28 (sigma F) factor Global regulator
fliC flagellar biosynthesis; flagellin, filament structural protein 1.1
fliD flagellar cap protein FliD; filament capping protein; enables filament assembly Basal machinery
fliE flagellar basal-body protein FliE 1.1
fliF flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein 1.1
fliG flagellar motor switch protein FliG 1.1
fliH flagellar biosynthesis protein FliH 1.1
fliI flagellum-specific ATP synthase FliI 1.1
fliJ flagellar biosynthesis protein FliJ 1.1
fliK flagellar hook-length control protein FliK 1.1
fliL flagellar biosynthesis Basal machinery
fliM flagellar motor switch protein FliM Basal machinery
fliN flagellar motor switch protein FliN Basal machinery
fliO flagellar biosynthesis protein FliO Basal machinery
fliP flagellar biosynthesis protein FliP Basal machinery
fliQ flagellar biosynthesis protein FliQ Basal machinery
fliR flagellar biosynthesis protein FliR Basal machinery
fliS flagellar biosynthesis protein FliS Basal machinery
fliT flagellar biosynthesis protein FliT Basal machinery
fliY periplasmic cystine-binding protein; member of extracellular bacterial solute-binding protein family III 1.1
fliZ FliZ DNA-binding transcriptional regulator 1.1
flu CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter 1.3
flxA Qin prophage; predicted protein Basal machinery
fmt 10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase Basal machinery
fnr FNR Global regulator
focA -- Basal machinery
focB FocB formate FNT transporter 1.3
folA dihydrofolate reductase 1.52
folB dihydroneopterin aldolase Basal machinery
folE GTP cyclohydrolase I monomer 1.13
folK 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase Basal machinery
folP FolP 1.1
fpr flavodoxin NADP+ reductase 1.1
frc formyl-CoA transferase monomer 1.1
frdA fumarate reductase flavoprotein Intermodular
frdB fumarate reductase iron-sulfur protein 1.6
frdC fumarate reductase membrane protein 1.6
frdD fumarate reductase membrane protein 1.6
frlA fructoselysine / psicoselysine transporter Basal machinery
frlB fructoselysine 6-phosphate deglycase monomer Basal machinery
frlC fructoselysine 3-epimerase Basal machinery
frlD fructoselysine 6-kinase Basal machinery
frlR predicted DNA-binding transcriptional regulator Basal machinery
frr ribosome recycling factor Basal machinery
frsA fermentation/respiration switch protein Basal machinery
fruA fructose PTS permease - FruA subunit Basal machinery
fruB fructose PTS permease - FruB subunit Basal machinery
fruK 1-phosphofructokinase monomer Basal machinery
frvR FrvR predicted transcriptional regulator Basal machinery
fryA fused predicted PTS enzyme: Hpr component / enzyme I component / enzyme IIA component Basal machinery
fsaA Fsa Basal machinery
fsr fosmidomycin efflux transporter Basal machinery
ftnA ferritin iron storage protein Basal machinery
ftnB predicted ferritin-like protein 1.1
ftsA essential cell division protein FtsA Intermodular
ftsB essential cell division protein FtsB Basal machinery
ftsH ATP-dependent zinc metalloprotease FtsH Basal machinery
ftsI essential cell division protein FtsI; penicillin-binding protein 3 Intermodular
ftsK essential cell division protein FtsK 1.14
ftsL essential cell division protein FtsL Intermodular
ftsP cell division protein required during stress conditions Basal machinery
ftsQ essential cell division protein FtsQ Intermodular
ftsW essential cell division protein FtsW; lipid II flippase Intermodular
ftsX cell division protein FtsX Basal machinery
ftsZ essential cell division protein FtsZ Intermodular
fucA -- 13
fucI -- 13
fucK L-fuculokinase 13
fucO L-1,2-propanediol oxidoreductase 13
fucP fucose:H+ symporter 13
fucR FucR transcriptional activator 13
fucU L-fucose mutarotase 13
fumA fumarase A monomer 1.16
fumB fumarase B monomer 1.6
fumC fumarase C monomer 1.1
fur Fur Global regulator
fusA elongation factor G Basal machinery
fxsA inner membrane protein; overproduction inhibits F exclusion of bacteriophage T7 Basal machinery
gabD -- Intermodular
gabP 4-aminobutyrate:H+ symporter Intermodular
gabT 4-aminobutyrate aminotransferase monomer Intermodular
gadA glutamate decarboxylase A subunit 1.1
gadB glutamate decarboxylase B subunit Intermodular
gadC glutamic acid:4-aminobutyrate antiporter 1.1
gadE GadE DNA-binding transcriptional activator 1.1
gadW GadW DNA-binding transcriptional dual regulator 1.1
gadX GadX DNA-binding transcriptional dual regulator 1.1
galE UDP-glucose 4-epimerase monomer Intermodular
galK galactokinase Intermodular
galM galactose-1-epimerase Intermodular
galP galactose:H+ symporter Intermodular
galR GalR DNA-binding transcriptional dual regulator 1.18
galS GalS DNA-binding transcriptional dual regulator 1.18
galT galactose-1-phosphate uridylyltransferase Intermodular
gapA glyceraldehyde 3-phosphate dehydrogenase-A monomer Basal machinery
garD galactarate dehydratase 7
garK glycerate kinase I 7
garL -- 7
garP galactarate / glucarate / glycerate transporter GarP 7
garR tartronate semialdehyde reductase 7
gatA galactitol PTS permease - GatA subunit 1.47
gatB galactitol PTS permease - GatB subunit 1.47
gatC galactitol PTS permease - GatC subunit 1.47
gatD galactitol-1-phosphate dehydrogenase 1.47
gatR_1 negative DNA-binding transcriptional regulator of galactitol metabolism 1.47
gatR_2 GatR_2 1.47
gatY GatY 1.47
gatZ -- Intermodular
gcd quinoprotein glucose dehydrogenase Basal machinery
gcl glyoxylate carboligase 3
gcvA GcvA DNA-binding transcriptional dual regulator 1.12
gcvH glycine cleavage system H protein Intermodular
gcvP glycine decarboxylase Intermodular
gcvR GcvR predicted transcriptional regulator Basal machinery
gcvT aminomethyltransferase Intermodular
gdhA GdhA Intermodular
gfcA predicted protein Basal machinery
gfcD putative lipoprotein Basal machinery
ghoS antitoxin of the GhoTS toxin-antitoxin system Basal machinery
ghoT toxin of the GhoTS toxin-antitoxin system Basal machinery
ghrA glyoxylate reductase / hydroxypyruvate reductase Basal machinery
ghrB GhrB Basal machinery
ghxP guanine / hypoxanthine transporter GhxP Basal machinery
ghxQ guanine / hypoxanthine transporter GhxQ Basal machinery
glcA glycolate / lactate:H+ symporter Intermodular
glcB malate synthase G Intermodular
glcC GlcC transcriptional dual regulator 1.56
glcD glycolate oxidase, predicted FAD-linked subunit Intermodular
glcE glycolate oxidase, predicted FAD-binding subunit Intermodular
glcF glycolate oxidase, predicted iron-sulfur subunit Intermodular
glcG conserved protein Intermodular
gldA GldA Basal machinery
glf UDP-galactopyranose mutase 1.12
glgA glycogen synthase 1.1
glgB 1,4-α-glucan branching enzyme 1.1
glgC GlgC 1.1
glgP GlgP 1.1
glgS surface composition regulator Basal machinery
glgX glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase 1.1
glk glucokinase/glucokinase Basal machinery
glmS GlmS Intermodular
glmU GlmU 1.5
glnA GlnA 1.1
glnB PII 1.32
glnD [protein-PII] uridylyltransferase Basal machinery
glnE glutamine synthetase adenylyltransferase/glutamine synthetase deadenylase Basal machinery
glnG NtrC transcriptional dual regulator 1.1
glnH glutamine ABC transporter - periplasmic binding protein 1.1
glnK GlnK 1.1
glnL NtrB 1.1
glnP glutamine ABC transporter - membrane subunit 1.1
glnQ glutamine ABC transporter - ATP binding subunit 1.1
glnS glutaminyl-tRNA synthetase Basal machinery
gloA glyoxalase I Basal machinery
gloB glyoxalase II Basal machinery
glpA anaerobic glycerol-3-phosphate dehydrogenase subunit A 8
glpB anaerobic glycerol-3-phosphate dehydrogenase subunit B 8
glpC anaerobic glycerol-3-phosphate dehydrogenase subunit C 8
glpD GlpD 8
glpE -- Basal machinery
glpF GlpF 8
glpG intramembrane serine protease GlpG Basal machinery
glpK GlpK 8
glpQ GlpQ 8
glpR GlpR DNA-binding transcriptional repressor 8
glpT glycerol-3-phosphate:phosphate antiporter 8
glpX fructose 1,6-bisphosphatase II 8
glrK GlrK sensory histidine kinase Basal machinery
glrR GlrR DNA-binding transcriptional activator 1.7
gltA citrate synthase monomer Basal machinery
gltB glutamate synthase, large subunit Intermodular
gltD glutamate synthase, small subunit Intermodular
gltF periplasmic protein Intermodular
gltI glutamate / aspartate ABC transporter - periplasmic binding protein 1.12
gltJ glutamate / aspartate ABC transporter - membrane subunit Basal machinery
gltK glutamate / aspartate ABC transporter - membrane subunit Basal machinery
gltL glutamate / aspartate ABC transporter - ATP binding subunit Basal machinery
gltP glutamate / aspartate : H+ symporter GltP Basal machinery
gltS glutamate:sodium symporter Basal machinery
gltX glutamyl-tRNA synthetase Basal machinery
gluQ glutamyl-Q tRNAAsp synthetase Basal machinery
glxK glycerate kinase II 3
glxR tartronate semialdehyde reductase 2 3
glyA serine hydroxymethyltransferase Intermodular
glyQ glycyl-tRNA synthetase, α subunit Basal machinery
glyS glycyl-tRNA synthetase, β subunit Basal machinery
gmhA -- Basal machinery
gmk guanylate kinase Basal machinery
gmr cyclic di-GMP phosphodiesterase 1.1
gnd Gnd 1.1
gnsA predicted regulator of phosphatidylethanolamine synthesis Basal machinery
gntK GntK 1.15
gntP gluconate / fructuronate transporter GntP Intermodular
gntR GntR DNA-binding transcriptional repressor 1.15
gntT gluconate transporter GntT 1.15
gntU gluconate transporter GntU 1.15
gntX protein involved in utilization of DNA as a carbon source 1.15
gor glutathione reductase (NADPH) 1.3
gph phosphoglycolate phosphatase Basal machinery
gpmA 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase monomer Basal machinery
gpmI -- Basal machinery
gpr -- Basal machinery
gpsA glycerol-3-phosphate dehydrogenase Basal machinery
gpt Gpt Basal machinery
grcA stress-induced alternate pyruvate formate-lyase subunit 1.43
greA transcription elongation factor GreA Basal machinery
greB transcription elongation factor GreB Basal machinery
groL GroEL chaperonin Basal machinery
groS GroES cochaperonin 1.12
grpE nucleotide exchange factor GrpE Basal machinery
grxA reduced glutaredoxin 1 1.3
grxB reduced glutaredoxin 2 Basal machinery
grxC reduced glutaredoxin 3 Basal machinery
grxD glutaredoxin 4 1.16
gshB glutathione synthetase monomer Basal machinery
gspA general secretory pathway component, cryptic Basal machinery
gspB calcium-binding protein required for initiation of chromosome replication Basal machinery
gspC putative protein secretion protein for export Basal machinery
gspD putative protein secretion protein for export Basal machinery
gspE putative protein secretion protein for export Basal machinery
gspF putative protein secretion protein for export Basal machinery
gspG putative protein secretion protein for export Basal machinery
gspH putative protein secretion protein for export Basal machinery
gspI putative protein secretion protein for export Basal machinery
gspJ putative protein secretion protein for export Basal machinery
gspK putative protein secretion protein for export Basal machinery
gspL putative protein secretion protein for export Basal machinery
gspM putative protein secretion protein Basal machinery
gspO leader peptidase, integral membrane protein Basal machinery
guaA GMP synthetase Intermodular
guaB GuaB Intermodular
guaD guanine deaminase Basal machinery
gudD D-glucarate dehydratase 7
gudP galactarate / glucarate / glycerate transporter GudP 7
gudX glucarate dehydratase-related protein 7
gutM GutM DNA-binding transcriptional activator 1.8
gutQ D-arabinose 5-phosphate isomerase 1.8
gyrA DNA gyrase, subunit A 57
gyrB DNA gyrase, subunit B Basal machinery
hcaB 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 19
hcaC 3-phenylpropionate dioxygenase, predicted ferredoxin subunit 19
hcaD 3-phenylpropionate dioxygenase, predicted ferredoxin reductase subunit 19
hcaE 3-phenylpropionate dioxygenase, α subunit 19
hcaF 3-phenylpropionate dioxygenase, β subunit 19
hcaR HcaR transcriptional dual regulator 19
hcaT HcaT MFS transporter Basal machinery
hchA glyoxalase III, Hsp31 molecular chaperone Basal machinery
hcp hybrid-cluster protein Intermodular
hcr NADH oxidoreductase Intermodular
hdeA acid-resistance protein, possible chaperone Intermodular
hdeB acid stress chaperone Intermodular
hdeD acid-resistance membrane protein 1.1
hdfR HdfR DNA-binding transcriptional dual regulator 1.41
hemA -- Basal machinery
hemB porphobilinogen synthase Basal machinery
hemE uroporphyrinogen decarboxylase Basal machinery
hemF coproporphyrinogen III oxidase Basal machinery
hemH ferrochelatase 1.3
hemL glutamate-1-semialdehyde aminotransferase Intermodular
hemN coproporphyrinogen III dehydrogenase Basal machinery
hflC regulator of FtsH protease Basal machinery
hflD lysogenization regulator 1.32
hflK regulator of FtsH protease Basal machinery
hflX GTPase associated with the 50S subunit of the ribosome Basal machinery
hfq RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins Basal machinery
hha haemolysin expression modulating protein Intermodular
hicA toxin of the HicA-HicB toxin-antitoxin system Basal machinery
hicB antitoxin of the HicA-HicB toxin-antitoxin system Basal machinery
higA antitoxin of the HigB-HigA toxin-antitoxin system Basal machinery
higB translation-dependent mRNA interferase, toxin of the HigB-HigA toxin-antitoxin system Basal machinery
hinT purine nucleoside phosphoramidase monomer Basal machinery
hipA serine/threonine kinase HipA 73
hipB HipB 73
hisA N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase Basal machinery
hisB -- Basal machinery
hisF imidazole glycerol phosphate synthase, HisF subunit Basal machinery
hisH imidazole glycerol phosphate synthase, HisH subunit Basal machinery
hisI phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase Basal machinery
hisJ histidine ABC transporter - periplasmic binding protein 1.1
hisM lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit 1.1
hisP lysine / arginine / ornithine ABC transporter / histidine ABC transporter - ATP binding subunit 1.1
hisQ lysine / arginine / ornithine ABC transporter / histidine ABC transporter - membrane subunit 1.1
hisS histidyl-tRNA synthetase Basal machinery
hldD -- Basal machinery
hldE -- Basal machinery
hlyE hemolysin E 74
hmp nitric oxide dioxygenase 1.13
hns H-NS DNA-binding transcriptional dual regulator Global regulator
hofB protein involved in plasmid replication Basal machinery
hofC protein transport protein HofC Basal machinery
hofM protein involved in utilization of DNA as a carbon source Basal machinery
hofN protein involved in utilization of DNA as a carbon source Basal machinery
hofO protein involved in utilization of DNA as a carbon source Basal machinery
hofP protein involved in utilization of DNA as a carbon source Basal machinery
hokA small toxic membrane polypeptide Basal machinery
hokC HokC, Gef toxin; interferes with membrane function when in excess Basal machinery
hokD Qin prophage; small toxic polypeptide 31
hokE HokE 1.14
holB DNA polymerase III, δ prime subunit Basal machinery
holC DNA polymerase III, χ subunit Basal machinery
holE DNA polymerase III, θ subunit Basal machinery
hpf hibernation promoting factor Basal machinery
hpt hypoxanthine-guanine phosphoribosyltransferase Basal machinery
hrpB predicted ATP-dependent helicase Basal machinery
hrsA -- 46
hscA chaperone for [Fe-S] cluster biosynthesis Basal machinery
hscB co-chaperone for [Fe-S] cluster biosynthesis 1.16
hscC Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription Basal machinery
hsdS specificity determinant for hsdM and hsdR Basal machinery
hslJ heat shock protein HslJ 1.1
hslO molecular chaperone Hsp33 Basal machinery
hslR heat shock protein Hsp15 involved in ribosome recycling Basal machinery
hslU ATPase component of the HslVU protease Basal machinery
hslV peptidase component of the HslVU protease Basal machinery
hspQ heat shock protein, hemimethylated DNA-binding protein Basal machinery
hsrA inner membrane protein HsrA Basal machinery
htgA predicted DNA-binding transcriptional regulator Basal machinery
htpG HtpG monomer Intermodular
htpX heat shock protein, integral membrane protein Basal machinery
htrE putative outer membrane usher protein Basal machinery
htrL involved in lipopolysaccharide biosynthesis Basal machinery
hupA transcriptional dual regulator HU-α (HU-2) 1.1
hupB transcriptional dual regulator HU-β, NS1 (HU-1) 1.1
hyaA hydrogenase 1, small subunit Intermodular
hyaB hydrogenase 1, large subunit Intermodular
hyaC hydrogenase 1, b-type cytochrome subunit Intermodular
hyaD protein involved in processing of HyaA and HyaB proteins Intermodular
hyaE protein involved in quality control of HyaA Intermodular
hyaF protein involved in nickel incorporation into hydrogenase 1 proteins Intermodular
hybA hydrogenase 2 4Fe-4S ferredoxin-type component Basal machinery
hybB predicted hydrogenase 2 cytochrome b type component Basal machinery
hybC hydrogenase 2, large subunit Basal machinery
hybD predicted maturation peptidase for hydrogenase 2 Basal machinery
hybE hydrogenase 2-specific chaperone Basal machinery
hybF protein involved with the maturation of hydrogenases 1 and 2 Basal machinery
hybG hydrogenase 2 accessory protein Basal machinery
hybO hydrogenase 2, small subunit 1.16
hycA regulator of the transcriptional regulator FhlA Intermodular
hycB hydrogenase 3, Fe-S subunit Intermodular
hycC hydrogenase 3, membrane subunit Intermodular
hycD hydrogenase 3, membrane subunit Intermodular
hycE hydrogenase 3, large subunit Intermodular
hycF formate hydrogenlyase complex iron-sulfur protein Intermodular
hycG hydrogenase 3 and formate hydrogenlyase complex, HycG subunit Intermodular
hycH protein required for maturation of hydrogenase 3 Intermodular
hycI hydrogenase 3 maturation protease Intermodular
hydN putative electron transport protein HydN 1.3
hyfA hydrogenase 4, component A 1.3
hyfB hydrogenase 4, component B 1.3
hyfC hydrogenase 4, component C 1.3
hyfD hydrogenase 4, component D 1.3
hyfE hydrogenase 4, component E 1.3
hyfF hydrogenase 4, component F 1.3
hyfG hydrogenase 4, large subunit 1.3
hyfH hydrogenase 4, component H 1.3
hyfI hydrogenase 4, small subunit 1.3
hyfJ hydrogenase 4 component J, putative protein processing element 1.3
hyfR HyfR DNA-binding transcriptional activator 1.3
hyi -- 3
hypA accessory protein for nickel incorporation into hydrogenase 3 1.3
hypB accessory protein for nickel incorporation into hydrogenase isoenzymes 1.3
hypC HypC, protein involved in hydrogenase 3 maturation 1.3
hypD HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor 1.3
hypE hydrogenase maturation protein, carbamoyl dehydratase 1.3
hypF hydrogenase maturation protein, carbamoyltransferase 1.3
hypT HypT transcriptional dual regulator 1.31
hyuA phenylhydantoinase Basal machinery
iadA IadA Basal machinery
iap alkaline phosphatase isozyme conversion protein Basal machinery
ibaG predicted DNA-binding transcriptional regulator 1.1
ibpA small heat shock protein IbpA 1.12
ibpB small heat shock protein IbpB Basal machinery
ibsA toxic peptide IbsA 63
ibsB predicted toxic peptide IbsB 64
ibsC toxic peptide IbsC 65
ibsD predicted toxic peptide IbsD 66
ibsE toxic peptide IbsE 62
icd Icd Basal machinery
iclR IclR transcriptional repressor 1.11
idi isopentenyl diphosphate isomerase Basal machinery
idnD L-idonate 5-dehydrogenase 1.15
idnK D-gluconate kinase, thermosensitive 1.15
idnO 5-keto-D-gluconate 5-reductase 1.15
idnR IdnR transcriptional regulator 1.15
idnT L-idonate / 5-ketogluconate / gluconate transporter IdnT 1.15
ihfA integration host factor (IHF), α subunit Global regulator
ihfB integration host factor (IHF), β subunit Global regulator
ileS isoleucyl-tRNA synthetase Basal machinery
ilvA IlvA Basal machinery
ilvB acetohydroxy acid synthase I, large subunit 1.12
ilvC -- Intermodular
ilvD IlvD Basal machinery
ilvE IlvE Basal machinery
ilvG_1 acetolactate synthase II, large subunit, N-ter fragment (pseudogene) Basal machinery
ilvG_2 acetolactate synthase II, large subunit, C-ter fragment (pseudogene) Basal machinery
ilvH IlvH Basal machinery
ilvI IlvI 1.1
ilvL ilvGEDA operon leader peptide Basal machinery
ilvM IlvM Basal machinery
ilvN acetohydroxy acid synthase I, small subunit Basal machinery
ilvX small protein Basal machinery
ilvY IlvY DNA-binding transcriptional dual regulator 1.38
inaA pH-inducible protein involved in stress response 1.1
infA protein chain initiation factor IF-1 Basal machinery
infB protein chain initiation factor IF2 1.1
infC protein chain initiation factor IF-3 Basal machinery
insA6 -- Basal machinery
insA7 -- Basal machinery
insAB-6 InsAB' transposase Basal machinery
insB6 -- Basal machinery
insC5 -- Basal machinery
insCD-5 IS2 element transposase InsAB' Basal machinery
insD5 -- Basal machinery
insD8 -- 16
insEF-2 IS3 element transposase Basal machinery
insEF-4 IS3 element transposase Basal machinery
insF2 -- Basal machinery
insF4 -- Basal machinery
insG IS1 predicted transposase Basal machinery
insH1 -- Basal machinery
insH11 -- Basal machinery
insH2 -- Basal machinery
insH3 -- Basal machinery
insH4 -- Basal machinery
insH5 -- Basal machinery
insH6 -- Basal machinery
insH7 -- Basal machinery
insH9 -- Basal machinery
insI1 -- Basal machinery
insI4 -- Basal machinery
insJ IS150 protein InsA Basal machinery
insK IS150 conserved protein InsB 1.14
insL1 -- Basal machinery
insL2 -- Basal machinery
insL3 -- Basal machinery
insN1 -- Basal machinery
insO1 -- Basal machinery
intD DLP12 prophage; predicted integrase Basal machinery
intQ Qin prophage; predicted defective integrase 16
intR Rac prophage; predicted integrase Basal machinery
intS CPS-53 (KpLE1) prophage; prophage CPS-53 integrase Basal machinery
intZ CPZ-55 prophage; predicted integrase Basal machinery
ipeX IpeX 1.49
iraD inhibitor of σS proteolysis Basal machinery
iraM inhibitor of σS proteolysis 1.1
iraP anti-adaptor protein for σS stabilization 1.1
IS128 IS128 1.2
IS129 IS129 1.2
iscA iron-sulfur cluster assembly protein 1.16
iscR IscR DNA-binding transcriptional dual regulator 1.16
iscS cysteine desulfurase monomer 1.16
iscU scaffold protein for iron-sulfur cluster assembly 1.16
iscX regulator of iron-sulfur cluster assembly Basal machinery
ispA geranyl diphosphate synthase/farnesyl diphosphate synthase Basal machinery
ispE -- Basal machinery
ispF 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer Basal machinery
ispG 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Basal machinery
ispH 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase Basal machinery
istR-1 Istr-1 1.64
ivbL ilvB operon leader peptide Basal machinery
ivy inhibitor of vertebrate C-type lysozyme Basal machinery
katE catalase II Basal machinery
katG hydroperoxidase I 1.3
kbaY KbaY 5
kbaZ -- 5
kbl Kbl Basal machinery
kch K+ channel Kch monomer Basal machinery
kdgR KdgR DNA-binding transcriptional repressor 1.59
kdpA K+ transporting ATPase - K+ channel forming subunit 23
kdpB K+ transporting ATPase - ATP binding subunit 23
kdpC K+ transporting ATPase - KdpC subunit 23
kdpE KdpE transcriptional activator 23
kdpF K+ transporting ATPase - KdpF subunit 23
kdsA 3-deoxy-D-manno-octulosonate 8-phosphate synthase Basal machinery
kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase Basal machinery
kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer Basal machinery
kdsD D-arabinose 5-phosphate isomerase Basal machinery
kduI predicted 5-keto 4-deoxyuronate isomerase monomer Basal machinery
kefC KefC Basal machinery
kefF regulator of KefC-mediated potassium transport and quinone oxidoreductase Basal machinery
kgtP α-ketoglutarate:H+ symporter Basal machinery
lacA galactoside O-acetyltransferase monomer 28
lacI LacI DNA-binding transcriptional repressor 28
lacY lactose / melibiose:H+ symporter LacY 28
lacZ β-galactosidase monomer 28
lamB LamB 1.10
lapA lipopolysaccharide assembly protein LapA Basal machinery
lapB lipopolysaccharide assembly protein LapB Basal machinery
ldcA L,D-carboxypeptidase A Basal machinery
ldcC LdcC Basal machinery
ldhA D-lactate dehydrogenase - fermentative Basal machinery
ldrA small toxic polypeptide LdrA 52
ldrB small toxic polypeptide LdrB 61
ldrD LdrD peptide of the LdrD-RdlD toxin-antitoxin system 53
lepB leader peptidase (signal peptidase I) Basal machinery
leuA 2-isopropylmalate synthase 1.1
leuB LeuB 1.1
leuC LeuC 1.1
leuD LeuD 1.1
leuE leucine efflux transporter Basal machinery
leuL leu operon leader peptide 1.1
leuO LeuO DNA-binding transcriptional dual regulator 1.1
lexA LexA 1.14
lgoR predicted DNA-binding transcriptional regulator 1.9
lgoT galactonate:H+ symporter Basal machinery
lhgO L-2-hydroxyglutarate oxidase 1.54
lhr member of ATP-dependent helicase superfamily II Basal machinery
ligB DNA ligase Basal machinery
lipA lipoate synthase monomer 1.43
lipB lipoyl(octanoyl) transferase Basal machinery
lit Lit, cell death peptidase; phage exclusion; e14 prophage Basal machinery
livF branched chain amino acid ABC transporter - ATP binding subunit Basal machinery
livG branched chain amino acid transporter - ATP binding subunit Basal machinery
livH branched chain amino acid transporter - membrane subunit Basal machinery
livJ branched chain amino acid ABC transporter - periplasmic binding protein 1.12
livK leucine ABC transporter - periplasmic binding protein 1.12
livM branched chain amino acid transporter - membrane subunit Basal machinery
lldD L-lactate dehydrogenase 42
lldP (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP 42
lldR LldR transcriptional repressor 42
lnt apolipoprotein N-acyltransferase Basal machinery
loiP outer membrane metallopeptidase 1.16
lolA periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer 1.1
lolB outer membrane lipoprotein, localization of lipoproteins in the outer membrane Basal machinery
lolC LolC Basal machinery
lolD LolD Basal machinery
lolE LolE Basal machinery
lon Lon Intermodular
lpd E3 monomer 1.43
lplA lipoyl-protein ligase A Basal machinery
lplT lysophospholipid transporter Basal machinery
lpoA outer membrane lipoprotein - activator of PBP1A activity Basal machinery
lpoB outer membrane lipoprotein - activator of PBP1B activity Basal machinery
lptA LptA Basal machinery
lptB LptB Basal machinery
lptC LptC Basal machinery
lptD outer membrane lipopolysaccharide transport and assembly complex - LptD subunit Basal machinery
lptF LptF Basal machinery
lptG LptG Basal machinery
lpxA LpxA 1.1
lpxB LpxB Basal machinery
lpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase Intermodular
lpxD -- 1.1
lpxK tetraacyldisaccharide 4'-kinase Basal machinery
lpxM myristoyl-acyl carrier protein (ACP)-dependent acyltransferase Basal machinery
lpxP palmitoleoyl acyltransferase Basal machinery
lpxT protein with low undecaprenyl pyrophosphate phosphatase activity Basal machinery
lrhA LrhA DNA-binding transcriptional dual regulator 59
lrp Lrp transcriptional dual regulator Global regulator
lspA prolipoprotein signal peptidase II Basal machinery
lsrA AI-2 ABC transporter - ATP binding subunit 9
lsrB Autoinducer-2 ABC transporter - periplasmic binding protein 9
lsrC Autoinducer-2 ABC transporter - membrane subunit 9
lsrD Autoinducer-2 ABC transporter - membrane subunit 9
lsrF predicted class I aldolase 9
lsrG Autoinducer 2-degrading protein 9
lsrK autoinducer-2 kinase 9
lsrR LsrR 9
luxS S-ribosylhomocysteine lyase 1.22
lysA LysA Intermodular
lysC LysC 1.4
lysP lysine:H+ symporter 1.4
lysR LysR DNA-binding transcriptional dual regulator 1.66
lysU lysyl-tRNA synthetase Basal machinery
lyx -- 1.28
macB MacAB-TolC macrolide efflux transport system - membrane subunit Basal machinery
maeA malate dehydrogenase, NAD-requiring Basal machinery
mak manno(fructo)kinase Basal machinery
malE maltose ABC transporter - periplasmic binding protein Intermodular
malF maltose ABC transporter - membrane subunit Intermodular
malG maltose ABC transporter - membrane subunit Intermodular
malI MalI DNA-binding transcriptional repressor 39
malK maltose ABC transporter - ATP binding subunit 1.10
malM maltose regulon periplasmic protein 1.10
malP maltodextrin phosphorylase monomer 1.10
malQ amylomaltase/amylomaltase/amylomaltase 1.10
malS α-amylase Intermodular
malT MalT transcriptional activator 1.10
malX MalX PTS permease 39
malY bifunctional β-cystathionase, PLP-dependent and regulator of maltose regulon 39
malZ maltodextrin glucosidase 1.10
manA mannose-6-phosphate isomerase Basal machinery
manX mannose PTS permease - ManX subunit Intermodular
manY mannose PTS permease - ManY subunit Intermodular
manZ mannose PTS permease - ManZ subunit Intermodular
marA MarA DNA-binding transcriptional dual regulator 1.1
marB multiple antibiotic resistance protein 1.1
marR MarR transcriptional repressor 1.1
mazE MazE antitoxin of the MazF-MazE toxin-antitoxin system 50
mazF MazF toxin of the MazF-MazE toxin-antitoxin system that exhibits ribonuclease activity 50
mazG nucleoside triphosphate pyrophosphohydrolase 50
mcbA protein involved in colanic acid production 26
mcbR McbR DNA-binding transcriptional dual regulator 26
mcrA restriction of DNA at 5-methylcytosine residues Basal machinery
mcrC MrcC subunit of 5-methylcytosine restriction system Basal machinery
mdaB NADPH quinone reductase monomer Basal machinery
mdh malate dehydrogenase 1.6
mdtA MdtABC-TolC multidrug efflux transport system - putative membrane fusion protein 1.1
mdtB MdtABC-TolC multidrug efflux system - membrane subunit 1.1
mdtC MdtABC-TolC multidrug efflux system - membrane subunit 1.1
mdtD predicted transport protein MdtD 1.1
mdtE MdtEF-TolC multidrug efflux transport system - membrane fusion protein 1.1
mdtF MdtEF-TolC multidrug efflux transport system - permease subunit 1.1
mdtK multidrug efflux transporter MdtK Basal machinery
mdtP SdsRQP multidrug efflux transport system - predicted outer membrane factor Basal machinery
melA α-galactosidase monomer 41
melB melibiose:H+/Na+/Li+ symporter 41
melR MelR DNA-binding transcriptional dual regulator 41
menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase Basal machinery
menB -- Basal machinery
menC o-succinylbenzoate synthase Basal machinery
menE MenE Basal machinery
mepH murein DD-endopeptidase MepH Basal machinery
metA homoserine O-succinyltransferase 1.13
metB MetB Intermodular
metC MetC 1.13
metE cobalamin-independent homocysteine transmethylase Intermodular
metF 5,10-methylenetetrahydrofolate reductase 1.13
metH cobalamin-dependent methionine synthase 1.13
metI L-methionine / D-methionine ABC transporter - membrane subunit Intermodular
metJ MetJ transcriptional repressor 1.13
metK methionine adenosyltransferase 1.13
metL MetL Intermodular
metN L-methionine / D-methionine ABC transporter - ATP binding subunit Intermodular
metQ L-methionine / D-methionine ABC transporter - periplasmic binding protein Intermodular
metR MetR 1.13
mfd transcription-repair coupling factor Basal machinery
mglA galactose ABC transporter - ATP binding subunit 1.18
mglB galactose ABC transporter - periplasmic binding protein 1.18
mglC galactose ABC transporter - membrane subunit 1.18
mgrB negative feedback regulator of the PhoQP system 1.1
mgtA Mg2+ / Ni2+ transporting ATPase 1.1
mgtL predicted leader peptide 1.1
mhpA 3-(3-hydroxyphenyl)propionate 2-hydroxylase 12
mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase monomer 12
mhpC 2-hydroxy-6-ketonona-2,4-dienedioate hydrolase 12
mhpD -- 12
mhpE 4-hydroxy-2-ketovalerate aldolase 12
mhpF acetaldehyde dehydrogenase 2 12
mhpR MhpR transcriptional activator 12
mhpT 3-hydroxyphenylpropionate / 3-hydroxycinnamate:H+ symporter Basal machinery
miaA tRNA(i6A37) synthase Basal machinery
micA MicA 1.65
minE cell division topological specificity factor and inhibitory component of the MinC-MinD-MinE system that regulates septum placement Basal machinery
mioC flavoprotein involved in biotin synthesis 1.1
mlc Mlc DNA-binding transcriptional repressor 1.10
mlrA MlrA DNA binding transcriptional activator 1.1
mltA membrane-bound lytic murein transglycosylase A Basal machinery
mltD membrane-bound lytic murein transglycosylase D Basal machinery
mltF membrane-bound lytic murein transglycosylase F 1.1
mmuM homocysteine S-methyltransferase Basal machinery
mmuP S-methyl-L-methionine transporter Basal machinery
mngB α-mannosidase 46
mngR MngR 46
mnmG protein involved in modification of U34 in tRNA 1.1
mntH Mn2+ / Fe2+: H+ symporter MntH Intermodular
mntP manganese export protein 1.37
mntR MntR 1.37
mntS small protein MntS 1.37
moaA molybdopterin biosynthesis protein A Intermodular
moaB MoaB protein Intermodular
moaC MoaC monomer Intermodular
moaD molybdopterin synthase small subunit Intermodular
moaE molybdopterin synthase large subunit Intermodular
mocA molybdenum cofactor cytidylyltransferase Basal machinery
modA molybdate ABC transporter - periplasmic binding protein 1.35
modB molybdate ABC transporter - membrane subunit 1.35
modC molybdate ABC transporter - ATP binding subunit 1.35
modE ModE 1.35
moeA molybdopterin molybdenumtransferase Basal machinery
moeB molybdopterin-synthase adenylyltransferase Basal machinery
mokB regulatory peptide whose translation enables hokB expression 70
mokC regulatory peptide whose translation enables hokC (gef) expression 56
molR_1 molybdate metabolism regulator (interrupted) 1.14
motA MotA protein, proton conductor component of motor; no effect on switching 1.1
motB MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall 1.1
mpaA murein tripeptide amidase A Basal machinery
mpl UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminoheptanedioate-D-alanine ligase/UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase Basal machinery
mppA murein tripeptide ABC transporter OppBCDFMppA - periplasmic binding protein Basal machinery
mprA MprA 1.44
mqo malate:quinone oxidoreductase Basal machinery
mqsA MqsA antitoxin of the MqsRA toxin-antitoxin system and DNA-binding transcriptional repressor 36
mqsR mRNA interferase, toxin of the MqsR-MqsA toxin-antitoxin system 36
mraY phospho-N-acetylmuramoyl-pentapeptide transferase Intermodular
mraZ MraZ DNA-binding transcriptional repressor 1.43
mreB MreB Basal machinery
mreC MreC Basal machinery
mreD MreD Basal machinery
mrp putative ATPase 1.16
msbA ATP-binding lipopolysaccharide transport protein Basal machinery
mscM mechanosensitive channel of miniconductance McsM monomer 1.1
msrA methionine sulfoxide reductase A Basal machinery
msrB methionine sulfoxide reductase B 1.16
msyB acidic protein that suppresses heat sensitivity of a secY mutant Basal machinery
mtfA Mlc titration factor Basal machinery
mtgA biosynthetic peptidoglycan transglycosylase Basal machinery
mtlA MtlA 48
mtlD mannitol-1-phosphate 5-dehydrogenase 48
mtlR MtlR DNA-binding transcriptional repressor 48
mtnN -- Basal machinery
mtr tryptohan / indole:H+ symporter Mtr Intermodular
mug stationary phase mismatch/uracil DNA glycosylase Basal machinery
mukB cell division protein involved in chromosome partitioning Basal machinery
mukE protein involved in chromosome partitioning Basal machinery
mukF Ca2+-binding protein involved in chromosome partitioning Basal machinery
murC UDP-N-acetylmuramate-alanine ligase Intermodular
murD UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase Intermodular
murE UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase Intermodular
murF D-alanyl-D-alanine-adding enzyme Intermodular
murG N-acetylglucosaminyl transferase Intermodular
murI glutamate racemase 1.1
murP N-acetylmuramic acid PTS permease / anhydro-N-acetylmuramic acid permease 49
murQ N-acetylmuramic acid 6-phosphate etherase 49
murR MurR 49
mutH MutH Basal machinery
mutL MutL Basal machinery
mutM formamidopyrimidine DNA glycosylase Basal machinery
mutS MutS Basal machinery
mzrA MzrA 1.1
nac Nac DNA-binding transcriptional dual regulator 1.1
nadA -- 25
nadB L-aspartate oxidase 25
nadC quinolinate phosphoribosyltransferase (decarboxylating) monomer Basal machinery
nadE NadE 1.22
nadK NAD kinase monomer Basal machinery
nadR NadR DNA-binding transcriptional repressor and NMN adenylyltransferase 25
nagA N-acetylglucosamine-6-phosphate deacetylase Intermodular
nagB glucosamine-6-phosphate deaminase 1.5
nagC NagC DNA-binding transcriptional dual regulator 1.5
nagE NagE 1.5
nagK N-acetyl-D-glucosamine kinase Basal machinery
nagZ β-N-acetylhexosaminidase Basal machinery
nanA N-acetylneuraminate lyase 1.25
nanC N-acetylneuraminic acid outer membrane channel Intermodular
nanE predicted N-acetylmannosamine-6-phosphate epimerase 1.25
nanK N-acetylmannosamine kinase 1.25
nanM N-acetylneuraminate mutarotase Intermodular
nanR NanR DNA-binding transcriptional dual regulator 1.25
nanS probable 9-O-acetyl-N-acetylneuraminate esterase Basal machinery
nanT N-acetylneuraminate:H+ symporter 1.25
napA large subunit of periplasmic nitrate reductase, molybdoprotein Intermodular
napB subunit of periplasmic nitrate reductase, cytochrome c550 protein Intermodular
napC periplasmic nitrate reductase, cytochrome c protein Intermodular
napD signal peptide-binding chaperone for NapA Intermodular
napF ferredoxin-type protein Intermodular
napG ferredoxin-type protein Intermodular
napH ferredoxin-type protein Intermodular
narG nitrate reductase A, α subunit 1.1
narH nitrate reductase A, β subunit 1.1
narI nitrate reductase A, γ subunit 1.1
narJ molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 1.1
narK nitrate:nitrite antiporter NarK Basal machinery
narL NarL Global regulator
narP NarP 1.33
narQ NarQ Basal machinery
narU nitrate / nitrite transporter NarU Basal machinery
narV nitrate reductase Z, γ subunit Basal machinery
narW NarW, probable private chaperone for NarZ nitrate reductase subunit Basal machinery
narX NarX 1.35
narY nitrate reductase Z, β subunit Basal machinery
narZ nitrate reductase Z, α subunit Basal machinery
ndh NADH:ubiquinone oxidoreductase II 1.43
ndk Ndk Basal machinery
nemA N-ethylmaleimide reductase, FMN-linked 1.1
nemR NemR DNA-binding transcriptional repressor 1.1
nfi endonuclease V (deoxyinosine 3'-endonuclease) Basal machinery
nfo endonuclease IV 1.1
nfsA NADPH nitroreductase Intermodular
nfsB NfsB monomer 1.1
nfuA iron-sulfur cluster scaffold protein Intermodular
nhaA NhaA 1.23
nhaB sodium:H+ antiporter Basal machinery
nhaR NhaR transcriptional activator 1.23
nhoA arylamine N-acetyltransferase Basal machinery
nikA nickel ABC transporter - periplasmic binding protein 15
nikB nickel ABC transporter - membrane subunit 15
nikC nickel ABC transporter - membrane subunit 15
nikD nickel ABC transporter - ATP binding subunit 15
nikE nickel ABC transporter - ATP binding subunit 15
nikR NikR DNA-binding transcriptional repressor, Ni-binding 15
ninE DLP12 prophage, conserved protein similar to phage 82 and lambda proteins Basal machinery
nirB nitrite reductase, large subunit 1.33
nirC nitrite transporter NirC 1.33
nirD nitrite reductase, small subunit 1.33
nlpA lipoprotein-28 1.1
nlpC NlpC-putative lipoprotein hydrolase Basal machinery
nlpD NlpD divisome associated factor; activates peptidoglycan hydrolase Basal machinery
nlpE outer membrane lipoprotein NlpE, involved in surface sensing Basal machinery
nlpI lipoprotein involved in cell division Basal machinery
nmpC outer membrane porin protein; locus of qsr prophage Intermodular
nohA Qin prophage; predicted packaging protein Basal machinery
norR NorR DNA-binding transcriptional dual regulator 1.20
norV flavorubredoxin Intermodular
norW NADH:flavorubredoxin reductase Intermodular
nrdA ribonucleoside diphosphate reductase 1, α subunit Intermodular
nrdB ribonucleoside diphosphate reductase 1, β subunit, ferritin-like Intermodular
nrdD ribonucleoside-triphosphate reductase 1.40
nrdE NrdE Intermodular
nrdF NrdF Intermodular
nrdG NrdG 1.40
nrdH glutaredoxin-like protein Intermodular
nrdI flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase Intermodular
nrdR NrdR 1.40
nrfA formate dependent nitrite reductase - NrfA subunit 1.33
nrfB formate-dependent nitrite reductase - penta-heme cytochrome c 1.33
nrfC formate-dependent nitrite reductase, 4Fe-4S subunit 1.33
nrfD formate dependent nitrate reductase - NrfD subunit 1.33
nrfE formate-dependent nitrite reductase; possible assembly function 1.33
nrfF activator of formate-dependent nitrite reductase complex 1.33
nrfG NrfG 1.33
nsrR NsrR Global regulator
nudB dihydroneopterin triphosphate pyrophosphohydrolase Basal machinery
nudC NADH pyrophosphatase Basal machinery
nudE ADP-sugar pyrophosphorylase Basal machinery
nudG 5-hydroxy-CTP diphosphatase Basal machinery
nudI pyrimidine deoxynucleoside triphosphate pyrophosphohydrolase Basal machinery
nudJ nucleoside di- and triphosphate hydrolase/HMP-PP hydrolase/thiamin pyrophosphate hydrolase Basal machinery
nudL predicted NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity Basal machinery
nuoA NADH:ubiquinone oxidoreductase, membrane subunit A Basal machinery
nuoB NADH:ubiquinone oxidoreductase, chain B Basal machinery
nuoC NADH:ubiquinone oxidoreductase, chain CD Basal machinery
nuoE NADH:ubiquinone oxidoreductase, chain E Basal machinery
nuoF NADH:ubiquinone oxidoreductase, chain F Basal machinery
nuoG NADH:ubiquinone oxidoreductase, chain G Basal machinery
nuoH NADH:ubiquinone oxidoreductase, membrane subunit H Basal machinery
nuoI NADH:ubiquinone oxidoreductase, chain I Basal machinery
nuoJ NADH:ubiquinone oxidoreductase, membrane subunit J Basal machinery
nuoK NADH:ubiquinone oxidoreductase, membrane subunit K Basal machinery
nuoL NADH:ubiquinone oxidoreductase, membrane subunit L Basal machinery
nuoM NADH:ubiquinone oxidoreductase, membrane subunit M 1.16
nuoN NADH:ubiquinone oxidoreductase, membrane subunit N Basal machinery
nupC nucleoside:H+ symporter NupC Intermodular
nupG nucleoside:H+ symporter NupG Intermodular
nusA transcription termination/antitermination L factor 1.1
nusB transcription antitermination protein NusB Basal machinery
ogrK DNA-binding transcriptional regulator, prophage P2 remnant Basal machinery
ogt O6-alkylguanine-DNA-alkyltransferase Basal machinery
ompA outer membrane protein A Intermodular
ompC OmpC Intermodular
ompF OmpF Intermodular
ompL predicted outer membrane porin L Basal machinery
ompN outer membrane pore protein N, non-specific Basal machinery
ompR OmpR 1.1
ompT outer membrane protease VII (outer membrane protein 3b) 1.1
ompW OmpW, outer membrane protein 1.60
ompX outer membrane protein X Intermodular
opgB phosphoglycerol transferase I 1.12
opgD glucan biosynthesis protein D Basal machinery
opgE phosphoethanolamine transferase Basal machinery
opgG periplasmic protein associated with synthesis of osmoregulated periplasmic glucans (OPGs) Basal machinery
opgH membrane glycosyltransferase; synthesis of osmoregulated periplasmic glucans (OPGs) Basal machinery
oppA peptide ABC transporter - periplasmic binding protein Intermodular
oppB murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit 1.35
oppC murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit 1.35
oppD murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit 1.35
oppF murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit 1.35
orn oligoribonuclease monomer Basal machinery
osmB OsmB osmotically inducible lipoprotein 1.1
osmC osmotically inducible peroxidase OsmC Intermodular
osmE osmotically inducible protein OsmE Basal machinery
osmF OsmF Basal machinery
osmY hyperosmotically inducible periplasmic protein 1.1
otsA trehalose-6-phosphate synthase Basal machinery
otsB trehalose-6-phosphate phosphatase Basal machinery
oxc oxalyl-CoA decarboxylase Basal machinery
oxyR OxyR DNA-binding transcriptional dual regulator 1.3
paaA ring 1,2-phenylacetyl-CoA epoxidase, monooxygenase subunit 4
paaB ring 1,2-phenylacetyl-CoA epoxidase subunit 4
paaC ring 1,2-phenylacetyl-CoA epoxidase, structural subunit 4
paaD phenylacetate degradation protein 4
paaE ring 1,2-phenylacetyl-CoA epoxidase, reductase subunit 4
paaF predicted 2,3-dehydroadipyl-CoA hydratase 4
paaG predicted ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) 4
paaH 3-hydroxyadipyl-CoA dehydrogenase (NAD+) 4
paaI phenylacetyl-CoA thioesterase 4
paaJ β-ketoadipyl-CoA thiolase 4
paaK phenylacetate-CoA ligase 4
paaX PaaX 4
paaY 2-hydroxycyclohepta-1,4,6-triene-1-carboxyl-CoA thioesterase Basal machinery
paaZ oxepin-CoA hydrolase/3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase 4
pabA PabA Basal machinery
pabB PabB Basal machinery
pabC pabC Basal machinery
pagP PagP monomer 1.1
pal Pal Basal machinery
panB 3-methyl-2-oxobutanoate hydroxymethyltransferase monomer Basal machinery
panC pantothenate synthetase monomer Basal machinery
panF pantothenate:Na+ symporter Basal machinery
panZ maturation factor for PanD Basal machinery
parC topoisomerase IV subunit A Basal machinery
patA putrescine aminotransferase 1.1
pbpC peptidoglycan glycosyltransferase Basal machinery
pbpG penicillin-binding protein 7 Basal machinery
pck phosphoenolpyruvate carboxykinase (ATP) Basal machinery
pcm L-isoaspartate protein carboxylmethyltransferase type II Basal machinery
pcnB poly(A) polymerase I Basal machinery
pdhR PdhR DNA-binding transcriptional dual regulator 1.43
pdxA PdxA Basal machinery
pdxJ PdxJ Basal machinery
pepA aminopeptidase A/I 1.58
pepB aminopeptidase B 1.16
pepD peptidase D 1.1
pepT peptidase T Basal machinery
pfkA 6-phosphofructokinase-1 monomer Basal machinery
pfkB 6-phosphofructokinase-2 monomer Basal machinery
pflA pyruvate formate-lyase activating enzyme 1.16
pflB PflB Basal machinery
pflC probable pyruvate formate lyase 2 activating enzyme Basal machinery
pflD formate acetyltransferase 2 Basal machinery
pgaA partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin Intermodular
pgaB poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase 1.23
pgaC poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit 1.23
pgaD poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit 1.23
pgi -- 1.1
pgk phosphoglycerate kinase Basal machinery
pgl 6-phosphogluconolactonase Basal machinery
pgm phosphoglucomutase 1.1
pgpA phosphatidylglycerophosphatase A Basal machinery
pgpB phosphatidylglycerophosphatase/diacylglycerol pyrophosphate phosphatase/undecaprenyl pyrophosphate phosphatase Basal machinery
pgpC phosphatidylglycerophosphatase C Basal machinery
pgrR PgrR DNA-binding transcriptional repressor Basal machinery
pheA PheA Basal machinery
pheL leader peptide of chorismate mutase-P-prephenate dehydratase Basal machinery
pheM phenylalanyl-tRNA synthetase (pheST) operon leader peptide Basal machinery
pheP phenylalanine:H+ symporter PheP Basal machinery
pheS phenylalanyl-tRNA synthetase α-chain Basal machinery
pheT phenylalanyl-tRNA synthetase β-chain Basal machinery
phnC phosphonate ABC transporter - ATP binding subunit 1.4
phnD phosphonate ABC transporter - periplasmic binding protein 1.4
phnE -- 1.4
phnE_2 phosphonate/organophosphate ester transporter (pseudogene) 1.4
phnF PhnF predicted transcriptional regulator 1.4
phnG PhnG subunit of methylphosphonate degradation complex 1.4
phnH PhnH subunit of methylphosphonate degradation complex 1.4
phnI PhnI subunit of methylphosphonate degradation complex 1.4
phnJ carbon-phosphorous lyase 1.4
phnK predicted carbon-phosphorous lyase subunit 1.4
phnL PhnL subunit of methylphosphonate degradation complex 1.4
phnM RPnTP hydrolase 1.4
phnN ribose 1,5-bisphosphokinase 1.4
phnO aminoalkylphosphonate N-acetyltransferase 1.4
phnP 5-phospho-α-D-ribosyl 1,2-cyclic phosphate phosphodiesterase 1.4
phoA PhoA 1.4
phoB PhoB transcriptional dual regulator 1.4
phoE PhoE 1.4
phoH ATP-binding protein 1.4
phoP PhoP 1.1
phoQ PhoQ sensory histidine kinase 1.1
phoR PhoR 1.4
phoU -- 1.4
phr deoxyribodipyrimidine photolyase (photoreactivation) 1.14
pinE e14 prophage; site-specific DNA recombinase Basal machinery
pinQ Qin prophage; predicted site-specific recombinase Basal machinery
pinR Rac prophage; predicted site-specific recombinase Basal machinery
pitA phosphate / arsenate:H+ symporter PitA Basal machinery
pitB phosphate transporter 1.4
pka peptidyl-lysine acetyltransferase Basal machinery
plaP putrescine:H+ symporter PlaP Basal machinery
pldA -- Basal machinery
pldB lysophospholipase L(2) Basal machinery
plsB glycerol-3-phosphate acyltransferase Basal machinery
pmrD polymyxin B resistance protein Basal machinery
pncB nicotinate phosphoribosyltransferase 25
pncC NMN aminohydrolase Basal machinery
pnp polynucleotide phosphorylase monomer 1.1
pntA pyridine nucleotide transhydrogenase, α subunit Basal machinery
pntB pyridine nucleotide transhydrogenase, β subunit Basal machinery
pnuC nicotinamide riboside transporter 25
polA DNA polymerase I, 5' --> 3' polymerase, 5' --> 3' and 3' --> 5' exonuclease 1.4
polB DNA polymerase II 1.14
potD putrescine / spermidine ABC transporter - periplasmic binding protein Basal machinery
potE putrescine:H+ symporter / putrescine:ornithine antiporter PotE Basal machinery
potF putrescine ABC transporter - periplasmic binding protein 1.1
potG putrescine ABC transporter - ATP binding subunit 1.1
potH putrescine ABC transporter - membrane subunit 1.1
potI putrescine ABC transporter - membrane subunit 1.1
poxB pyruvate oxidase monomer 1.1
ppc Ppc Basal machinery
ppdA conserved protein Basal machinery
ppdB conserved protein Basal machinery
ppdC predicted protein Basal machinery
ppdD prepilin peptidase dependent protein Basal machinery
pphA protein phosphatase 1 modulates phosphoproteins, signals protein misfolding Basal machinery
pphB protein-tyrosine-phosphatase/phosphoprotein phosphatase Basal machinery
ppiA peptidyl-prolyl cis-trans isomerase A (rotamase A) Intermodular
ppiD periplasmic folding chaperone 1.1
ppk Ppk Basal machinery
pppA prepilin peptidase Basal machinery
ppsA phosphoenolpyruvate synthetase Basal machinery
ppsR PEP synthetase regulatory protein Basal machinery
pptA probable 4-oxalocrotonate tautomerase (4-OT) monomer Basal machinery
ppx exopolyphosphatase monomer Basal machinery
pqiA paraquat-inducible protein A 1.1
pqiB paraquat-inducible protein B 1.1
pqqL putative zinc peptidase 1.3
prc tail-specific protease Basal machinery
preA NADH-dependent dihydropyrimidine dehydrogenase subunit Basal machinery
preT NADH-dependent dihydropyrimidine dehydrogenase subunit Basal machinery
prfA peptide chain release factor RF1 Basal machinery
prfB peptide chain release factor RF2 Basal machinery
prfC peptide chain release factor RF3 Basal machinery
priB PriB Basal machinery
prlC oligopeptidase A Basal machinery
prlF PrlF antitoxin Basal machinery
prmA methyltransferase for 50S ribosomal subunit protein L11 Basal machinery
prmC protein-(glutamine-N5) methyltransferase Basal machinery
proA ProA Basal machinery
proB ProB Basal machinery
proP ProP Basal machinery
proS prolyl-tRNA synthetase Basal machinery
proV glycine betaine / proline ABC transporter - ATP binding subunit Basal machinery
proW glycine betaine / proline ABC transporter - membrane subunit Basal machinery
proX glycine betaine / proline ABC transporter - periplasmic binding protein Basal machinery
prpB 2-methylisocitrate lyase 1.17
prpC 2-methylcitrate synthase 1.17
prpD 2-methylcitrate dehydratase 1.17
prpE propionyl-CoA synthetase 1.17
prpR PrpR DNA-binding transcriptional dual regulator 1.17
prs ribose-phosphate diphosphokinase 1.32
psd phosphatidylserine decarboxylase, proenzyme 1.1
psiE predicted phosphate starvation-inducible protein 1.4
psiF conserved protein 1.4
pspA regulatory protein for the phage shock protein operon 14
pspB stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair 14
pspC PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair 14
pspD peripheral inner membrane phage-shock protein 14
pspE thiosulfate sulfurtransferase 14
pspF PspF transcriptional dual regulator 14
pspG phage shock protein G 14
pssA PssA Basal machinery
pstA phosphate ABC transporter - membrane subunit 1.4
pstB phosphate ABC transporter - ATP binding subunit 1.4
pstC phosphate ABC transporter - membrane subunit 1.4
pstS phosphate ABC transporter - periplasmic binding protein 1.4
psuG predicted pseudouridine 5'-phosphate glycosidase Basal machinery
psuT predicted pseudouridine transporter - PsuT Basal machinery
pth peptidyl-tRNA hydrolase Basal machinery
ptsG glucose PTS permease - PtsG subunit Intermodular
ptsH HPr Intermodular
ptsI PtsI Intermodular
ptsN phosphotransferase system enzyme IIA, regulation of potassium transport Basal machinery
ptsO -- Basal machinery
purA PurA Intermodular
purB adenylosuccinate lyase 1.32
purC PurC 1.32
purD phosphoribosylamine-glycine ligase Intermodular
purE PurE 1.32
purF PurF 1.32
purH AICAR transformylase/IMP cyclohydrolase Intermodular
purK N5-carboxyaminoimidazole ribonucleotide synthetase monomer 1.32
purL phosphoribosylformylglycinamide synthetase 1.32
purM PurM 1.32
purN phosphoribosylglycinamide formyltransferase 1 1.32
purR PurR 1.32
purT phosphoribosylglycinamide formyltransferase 2 Basal machinery
purU formyltetrahydrofolate deformylase Basal machinery
putA fused PutA transcriptional repressor / proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase 1.1
putP proline:Na+ symporter 1.1
puuA glutamate-putrescine ligase Basal machinery
puuB γ-glutamylputrescine oxidase Basal machinery
puuC γ-glutamyl-γ-aminobutyraldehyde dehydrogenase Basal machinery
puuD γ-glutamyl-γ-aminobutyrate hydrolase Basal machinery
puuE 4-aminobutyrate aminotransferase Basal machinery
puuP putrescine:H+ symporter PuuP Basal machinery
puuR PuuR DNA-binding transcriptional repressor Basal machinery
pykA pyruvate kinase II monomer Basal machinery
pykF pyruvate kinase I monomer Basal machinery
pyrC PyrC 1.32
pyrD dihydroorotate dehydrogenase, type 2 1.32
pyrE PyrE Basal machinery
pyrF PyrF Basal machinery
pyrH UMP kinase Basal machinery
qseB QseB transcriptional activator 55
qseC QseC sensory histidine kinase 55
queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase Basal machinery
queE conserved protein Basal machinery
racC Rac prophage; predicted protein Basal machinery
racR Rac prophage; predicted DNA-binding transcriptional regulator Basal machinery
raiA stationary phase translation inhibitor and ribosome stability factor Basal machinery
rapA -- Basal machinery
rapZ RNase adaptor protein Basal machinery
rarA recombination factor 1.1
rarD predicted chloramphenicol resistance permease Basal machinery
rayT REP-associated tyrosine transposase Basal machinery
rbfA 30S ribosome binding factor 1.1
rbn Rbn Basal machinery
rbsA ribose ABC transporter - putative ATP binding subunit 1.36
rbsB ribose ABC transporter - putative periplasmic binding protein 1.36
rbsC ribose ABC transporter - membrane subunit 1.36
rbsD ribose pyranase Intermodular
rbsK ribokinase 1.36
rbsR RbsR DNA-binding transcriptional dual regulator 1.36
rclA predicted oxidoreductase with FAD/NAD(P)-binding domain and dimerization domain; hypochlorite stress response 1.1
rclB predicted protein, hypochlorite stress response 1.1
rclC conserved inner membrane protein, hypochlorite stress response 1.1
rclR RclR DNA-binding transcriptional activator Basal machinery
rcnA Ni2+ / Co2+ efflux transporter 1.42
rcnB periplasmic protein involved in nickel/cobalt efflux Intermodular
rcnR RcnR DNA-binding transcriptional repressor 1.42
rcsA positive DNA-binding transcriptional regulator of capsular polysaccharide synthesis, activates its own expression 1.1
rcsB RcsB 1.1
rcsC RcsC sensory histidine kinase Basal machinery
rcsD RcsD phosphotransferase Basal machinery
rdgB -- Basal machinery
rdoA serine/threonine protein kinase 1.1
recA DNA strand exchange and recombination protein with protease and nuclease activity 1.14
recC RecC Basal machinery
recF ssDNA and dsDNA binding, ATP binding 1.4
recG RecG DNA helicase Basal machinery
recJ RecJ Basal machinery
recN protein used in recombination and DNA repair 1.14
recO protein interacts with RecR and possibly RecF proteins Basal machinery
recQ ATP-dependent DNA helicase Basal machinery
recR recombination and repair Basal machinery
recX regulatory protein RecX; inhibitor of RecA 1.14
relA GDP pyrophosphokinase/GTP pyrophosphokinase Basal machinery
relB RelB Qin prophage; antitoxin of the RelE-RelB toxin-antitoxin system and DNA binding transcriptional repressor 31
relE Qin prophage; toxin of the RelE-RelB toxin-antitoxin system and cofactor to enhance the repressor activity of RelB 31
rem Qin prophage; predicted protein Basal machinery
rfaC -- Basal machinery
rfaG -- Basal machinery
rfaH RfaH transcriptional antiterminator Basal machinery
rfbX O-antigen flippase 1.12
rfc -- 1.12
rfe -- Basal machinery
rffA dTDP-4-dehydro-6-deoxy-D-glucose transaminase Basal machinery
rffD -- Basal machinery
rffG dTDP-glucose 4,6-dehydratase 2 Basal machinery
rffM UDP-N-acetyl-D-mannosaminuronic acid transferase Basal machinery
rhaA L-rhamnose isomerase 17
rhaB L-rhamnulose kinase 17
rhaD rhamnulose-1-phosphate aldolase monomer 17
rhaR RhaR transcriptional activator 17
rhaS RhaS 17
rhaT rhamnose / lyxose:H+ symporter 17
rhlE ATP-dependent RNA helicase Basal machinery
rhsB RhsB protein in rhs element Basal machinery
rhsC RhsC protein in rhs element Basal machinery
rhsD RhsD protein in rhs element Basal machinery
rhtA threonine / homoserine efflux transporter Basal machinery
rhtC RhtC threonine Rht Transporter Basal machinery
ribA GTP cyclohydrolase II 1.1
ribC -- Basal machinery
ribD fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase Basal machinery
ribE RibE Basal machinery
ribF bifunctional riboflavin kinase / FMN adenylyltransferase Basal machinery
rihA ribonucleoside hydrolase 1 (pyrimidine-specific) Basal machinery
rihB ribonucleoside hydrolase 2 (pyrimidine-specific) Basal machinery
rimK ribosomal protein S6 modification protein Intermodular
rimM ribosome maturation protein Basal machinery
rimP ribosome maturation protein 1.1
rlmA 23S rRNA m1G745 methyltransferase Basal machinery
rlmC 23S rRNA m5U747 methyltransferase Basal machinery
rlmD 23S rRNA m5U1939 methyltransferase 1.3
rlmE 23S rRNA 2'-O-ribose U2552 methyltransferase Basal machinery
rlmF 23S rRNA m6A1618 methyltransferase Basal machinery
rlmG 23S rRNA m2G1835 methyltransferase Basal machinery
rlmI 23S rRNA m5C1962 methyltransferase monomer Basal machinery
rlpA rare lipoprotein RlpA Basal machinery
rluA 23S rRNA and tRNA pseudouridine synthase Basal machinery
rluF 23S rRNA pseudouridine 2604 synthase Basal machinery
rmf ribosome modulation factor Basal machinery
rmlA1 -- 1.12
rmlA2 -- Basal machinery
rnb ribonuclease II Basal machinery
rnc RNase III Basal machinery
rnd RNase D Basal machinery
rne RNase E Basal machinery
rnhB RNAse HII, degrades RNA of DNA-RNA hybrids Basal machinery
rnk regulator of nucleoside diphosphate kinase Basal machinery
rnlA CP4-57 prophage; RNase LS, toxin of the RnlAB toxin-antitoxin system 1.16
rnlB CP4-57 prophage; antitoxin of the RnlA-RnlB toxin-antitoxin system Basal machinery
rnpA RNase P protein component; processes tRNA, 4.5S RNA 7
rob Rob DNA-binding transcriptional activator 1.1
rodZ transmembrane component of cytoskeleton Basal machinery
rof modulator of Rho-dependent transcription termination Basal machinery
roxA ribosomal protein-arginine oxygenase Basal machinery
rpe ribulose-5-phosphate 3-epimerase Basal machinery
rpiB allose-6-phosphate isomerase / ribose-5-phosphate isomerase B monomer 20
rpiR AlsR DNA-binding transcriptional repressor 20
rplB 50S ribosomal subunit protein L2 Basal machinery
rplC 50S ribosomal subunit protein L3 Basal machinery
rplD 50S ribosomal subunit protein L4 Basal machinery
rplI 50S ribosomal subunit protein L9 Basal machinery
rplM 50S ribosomal subunit protein L13 Basal machinery
rplP 50S ribosomal subunit protein L16 Basal machinery
rplQ 50S ribosomal subunit protein L17 Basal machinery
rplS 50S ribosomal subunit protein L19 Basal machinery
rplT 50S ribosomal subunit protein L20 Basal machinery
rplU 50S ribosomal subunit protein L21 1.1
rplV 50S ribosomal subunit protein L22 Basal machinery
rplW 50S ribosomal subunit protein L23 Basal machinery
rplY 50S ribosomal subunit protein L25 Basal machinery
rpmA 50S ribosomal subunit protein L27 1.1
rpmC 50S ribosomal subunit protein L29 Basal machinery
rpmE 50S ribosomal subunit protein L31 Basal machinery
rpmI 50S ribosomal subunit protein L35 Basal machinery
rpoA RNA polymerase, α subunit Basal machinery
rpoD RNA polymerase, sigma 70 (sigma D) factor Global regulator
rpoE RNA polymerase, sigma 24 (sigma E) factor Global regulator
rpoH RNA polymerase, sigma 32 (sigma H) factor Global regulator
rpoN RNA polymerase, sigma 54 (sigma N) factor Global regulator
rpoS RNA polymerase, sigma S (sigma 38) factor Global regulator
rpoZ RNA polymerase, ω subunit Basal machinery
rpsA 30S ribosomal subunit protein S1 Basal machinery
rpsB 30S ribosomal subunit protein S2 Basal machinery
rpsC 30S ribosomal subunit protein S3 Basal machinery
rpsD 30S ribosomal subunit protein S4 Basal machinery
rpsF 30S ribosomal subunit protein S6 Basal machinery
rpsI 30S ribosomal subunit protein S9 Basal machinery
rpsJ 30S ribosomal subunit protein S10 Basal machinery
rpsK 30S ribosomal subunit protein S11 Basal machinery
rpsM 30S ribosomal subunit protein S13 Basal machinery
rpsO 30S ribosomal subunit protein S15 1.1
rpsP 30S ribosomal subunit protein S16 Basal machinery
rpsQ 30S ribosomal subunit protein S17 Basal machinery
rpsR 30S ribosomal subunit protein S18 Basal machinery
rpsS 30S ribosomal subunit protein S19 Basal machinery
rpsU 30S ribosomal subunit protein S21 1.14
rraA ribonuclease E inhibitor protein Basal machinery
rraB ribonuclease E inhibitor protein B Basal machinery
rrrD DLP12 prophage; lysozyme Basal machinery
rsd regulator of σ70D), stationary phase protein Basal machinery
rseA anti-sigma factor 1.1
rseB rseB 1.1
rseC SoxR and σE factor regulatory protein RseC 1.1
rseP RseP zinc protease, signal peptide peptidase Basal machinery
rsgA ribosome small subunit-dependent GTPase A Basal machinery
rsmA 16S rRNA m62A1518,m62A1519 dimethyltransferase Basal machinery
rsmB 16S rRNA m5C967 methyltransferase Basal machinery
rsmC 16S rRNA m2G1207 methyltransferase Basal machinery
rsmD 16S rRNA m2G966 methyltransferase Basal machinery
rsmE 16S rRNA m3U1498 methyltransferase monomer Basal machinery
rsmG 16S rRNA m7G527 methyltransferase Basal machinery
rsmH 16S rRNA m4C1402 methyltransferase 1.43
rsmI 16S rRNA 2'-O-ribose C1402 methyltransferase Basal machinery
rsmJ 16S rRNA m2G1516 methyltransferase Basal machinery
rssA conserved protein Basal machinery
rssB regulator of RpoS Basal machinery
rstA RstA transcriptional regulator 1.1
rstB RstB sensory histidine kinase 1.1
rsuA 16S rRNA pseudouridine 516 synthase Basal machinery
rtcA RNA 3'-terminal phosphate cyclase 37
rtcB RNA ligase 37
rtcR RtcR DNA-binding transcriptional activator 37
rtn conserved protein Basal machinery
rusA endodeoxyribonuclease RUS (Holliday junction resolvase) Basal machinery
rutA pyrimidine oxygenase 1.1
rutB peroxyureidoacrylate / ureidoacrylate amido hydrolase 1.1
rutC predicted aminoacrylate peracid reductase 1.1
rutD predicted aminoacrylate hydrolase 1.1
rutE predicted malonic semialdehyde reductase 1.1
rutF flavin reductase 1.1
rutG uracil:H+ symporter RutG 1.1
rutR RutR DNA-binding transcriptional dual regulator 1.1
ruvA branch migration of Holliday structures; repair 1.14
ruvB branch migration of Holliday structures; repair helicase 1.14
ruvC Holliday junction nuclease; resolution of structures; repair Basal machinery
rybA RybA small RNA 1.37
rzpD DLP12 prophage; predicted murein endopeptidase Basal machinery
rzpQ -- Basal machinery
rzpR Rac prophage; predicted defective peptidase Basal machinery
sad -- Basal machinery
safA two-component system connector protein 1.1
sanA vancomycin sensitivity Basal machinery
sapF ATP binding protein SapF of predicted ABC transporter Basal machinery
sbcC ATP-dependent dsDNA exonuclease Basal machinery
sbcD ATP-dependent dsDNA exonuclease Basal machinery
sbmA -- Basal machinery
sbmC DNA gyrase inhibitor 1.14
sdaA L-serine deaminase I Basal machinery
sdaB L-serine deaminase II 1.1
sdaC serine:H+ symporter SdaC 1.1
sdhA succinate:quinone oxidoreductase, FAD binding protein Basal machinery
sdhB succinate:quinone oxidoreductase, iron-sulfur cluster binding protein Basal machinery
sdhC succinate:quinone oxidoreductase, membrane protein SdhC Basal machinery
sdhD succinate:quinone oxidoreductase, membrane protein SdhC 1.16
sdiA SdiA DNA-binding transcriptional dual regulator 1.1
secG SecG Basal machinery
selB selenocysteyl-tRNA-specific translation elongation factor Basal machinery
seqA SeqA, negative modulator of initiation of replication 1.1
serA -- Intermodular
serC -- Basal machinery
setA sugar / lactose efflux transporter SetA 1.19
setB sugar / lactose efflux transporter SetB Basal machinery
setC inner membrane protein SetC - putative arabinose efflux protein Basal machinery
sfmA predicted fimbrial-like adhesin protein Basal machinery
sfmC predicted pilin chaperone, periplasmic Basal machinery
sfmD predicted outer membrane export usher protein Basal machinery
sfmH predicted fimbrial-like adhesin protein 1.12
sfsA predicted DNA-binding transcriptional regulator of maltose metabolism Basal machinery
sfsB Nlp transcriptional regulator Basal machinery
sgbE L-ribulose-5-phosphate 4-epimerase 1.28
sgbH 3-keto-L-gulonate 6-phosphate decarboxylase 1.28
sgbU predicted L-xylulose 5-phosphate 3-epimerase 1.28
sgrR SgrR DNA-binding transcriptional dual regulator 1.19
sgrT SgrT, regulator of PtsG activity 1.19
shiA shikimate:H+ symporter 1.16
shoB toxic peptide ShoB 69
sixA phosphohistidine phosphatase Basal machinery
skp periplasmic chaperone 1.1
slmA cell division inhibitor, nucleoid occlusion Basal machinery
slp starvation lipoprotein Intermodular
slt soluble lytic murein transglycosylase Basal machinery
slyA SlyA DNA-binding transcriptional activator 74
slyB outer membrane lipoprotein 1.1
slyD FKBP-type peptidyl prolyl cis-trans isomerase Basal machinery
slyX host factor for lysis of φX174 infection Basal machinery
smpB small protein B Basal machinery
smrA conserved protein with endonuclease activity Basal machinery
smtA predicted S-adenosylmethionine-dependent methyltransferase Basal machinery
sodA SodA Intermodular
sodB SodB Intermodular
sodC superoxide dismutase (Cu-Zn) Basal machinery
sohB predicted inner membrane peptidase Basal machinery
soxR SoxR DNA-binding transcriptional dual regulator 1.1
soxS SoxS DNA-binding transcriptional dual regulator 1.1
speA SpeA 1.32
speB SpeB 1.32
speC ornithine decarboxylase, biosynthetic Basal machinery
speD adenosylmethionine decarboxylase, proenzyme Basal machinery
speE SpeE Basal machinery
spoT guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase/GDP diphosphokinase/guanosine-3',5'-bis(diphosphate) 3'-diphosphatase Basal machinery
sppA protease IV Basal machinery
spy -- 1.1
sra 30S ribosomal subunit protein S22 1.1
srlA sorbitol PTS permease - SrlA subunit 1.8
srlB sorbitol PTS permease - SrlB subunit Intermodular
srlD SrlD Intermodular
srlE sorbitol PTS permease - SrlE subunit 1.8
srlR GutR DNA-binding transcriptional repressor 1.8
srmB SrmB, DEAD-box RNA helicase Basal machinery
sroA SroA 1.19
sroC SroC Basal machinery
sroD SroD 1.11
sroE SroE Basal machinery
ssb ssDNA-binding protein 1.14
sseB overproduction causes enhanced serine sensitivity Intermodular
ssnA predicted chlorohydrolase/aminohydrolase Basal machinery
sstT serine / threonine:Na+ symporter 1.12
ssuA aliphatic sulfonate ABC transporter - periplasmic binding protein 1.1
ssuB aliphatic sulfonate ABC transporter - ATP binding subunit 1.1
ssuC aliphatic sulfonate ABC transporter - membrane subunit 1.1
ssuD alkanesulfonate monooxygenase, FMNH2-dependent 1.1
ssuE NAD(P)H-dependent FMN reductase Intermodular
stpA H-NS-like DNA-binding protein with RNA chaperone activity 1.1
sucA subunit of E1(0) component of 2-oxoglutarate dehydrogenase Basal machinery
sucB SucB Basal machinery
sucC succinyl-CoA synthetase, β subunit Basal machinery
sucD succinyl-CoA synthetase, α subunit Basal machinery
sufA Fe-S cluster assembly, scaffold protein Intermodular
sufB SufB component of SufBCD Fe-S cluster scaffold complex Intermodular
sufC SufC component of SufBCD Fe-S cluster scaffold complex Intermodular
sufD SufD component of SufBCD Fe-S cluster scaffold complex Intermodular
sufE sulfur acceptor for SufS cysteine desulfurase Intermodular
sufS L-cysteine desulfurase Intermodular
sulA SOS cell division inhibitor 1.14
surA peptidyl-prolyl cis-trans isomerase (PPIase) Basal machinery
syd SecY-interacting protein Basal machinery
symE toxin-like protein of the SOS response Intermodular
tabA toxin-antitoxin biofilm protein Basal machinery
tadA tRNA-specific adenosine deaminase monomer Basal machinery
talA transaldolase A 1.5
tam trans-aconitate 2-methyltransferase 9
tamA translocation and assembly module - TamA subunit Basal machinery
tamB translocation and assembly module - TamB subunit Basal machinery
tap -- Basal machinery
tar -- Basal machinery
tas putative NAD(P)-linked reductase that acts in starvation-associated mutation Basal machinery
tatA TatA Basal machinery
tatB TatB Basal machinery
tatC TatC Basal machinery
tatD ssDNA/RNA exonuclease, 3' → 5' specific Basal machinery
tatE TatE Basal machinery
tauA taurine ABC transporter - periplasmic binding protein 1.1
tauB taurine ABC transporter - ATP binding subunit 1.1
tauC taurine ABC transporter - membrane subunit 1.1
tauD taurine dioxygenase monomer 1.1
tdcA TdcA DNA-binding transcriptional activator 10
tdcB TdcB 10
tdcC serine / threonine:H+ symporter TdcC 10
tdcD propionate kinase 10
tdcE 2-ketobutyrate formate-lyase/pyruvate formate-lyase 4, inactive 10
tdcF predicted enamine/imine deaminase 10
tdcG L-serine deaminase III 10
tdcR TdcR DNA-binding transcriptional activator 10
tdh Tdh Basal machinery
tdk thymidine kinase/deoxyuridine kinase Basal machinery
tehA tellurite resistance protein / ethidium efflux transporter Basal machinery
tehB tellurite methyltransferase Basal machinery
tfaE e14 prophage; predicted tail fiber assembly protein Basal machinery
tfaQ Qin prophage; predicted tail fibre assembly protein Basal machinery
thiB -- 1.19
thiD -- Basal machinery
thiK thiamin kinase Basal machinery
thiL thiamin monophosphate kinase Basal machinery
thiP thiamin ABC transporter - membrane subunit 1.19
thiQ thiamin ABC transporter - ATP binding subunit 1.19
thrA ThrA Basal machinery
thrB ThrB Basal machinery
thrC threonine synthase Basal machinery
thrL thr operon leader peptide Basal machinery
thrS threonyl-tRNA synthetase Basal machinery
thyA thymidylate synthase Basal machinery
tig chaperone protein Tig; trigger factor Basal machinery
tisA -- 1.64
tisB toxic peptide TisB Intermodular
tktB transketolase II Basal machinery
tldD protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD Basal machinery
tmcA tRNAMet cytidine acetyltransferase Basal machinery
tmk dTMP kinase Basal machinery
tnaA tryptophanase 1.1
tnaB tryptophan:H+ symporter TnaB 1.1
tnaC tna operon leader peptide 1.1
tolA TolA Basal machinery
tolB TolB Basal machinery
tolC TolC monomer 1.1
tolQ TolQ Basal machinery
tolR TolR Basal machinery
tomB protein that modulates Hha toxicity Intermodular
tonB TonB energy transducing system - TonB subunit Basal machinery
topA DNA topoisomerase I Basal machinery
torA trimethylamine N-oxide reductase, catalytic subunit 1.1
torC TorC trimethylamine N-oxide reductase, cytochrome c-type subunit 1.1
torD chaperone protein for trimethylamine-N-oxide oxidoreductase I 1.1
torR TorR 1.1
torS TorS monomer Basal machinery
torT periplasmic sensory protein associated with the TorRS two-component regulatory system Basal machinery
tpiA triose phosphate isomerase monomer Basal machinery
tpke11 Tpke11 Basal machinery
tpr predicted protamine-like protein Basal machinery
tpx lipid hydroperoxide peroxidase Basal machinery
treA periplasmic trehalase Basal machinery
treB trehalose PTS permease - TreB subunit 1.1
treC trehalose-6-phosphate hydrolase 1.1
treF cytoplasmic trehalase Basal machinery
treR TreR transcriptional repressor 1.1
trg -- Basal machinery
trkG K+ transporter TrkG Basal machinery
trmA tRNA m5U54 methyltransferase Basal machinery
trmD tRNA m1G37 methyltransferase Basal machinery
trmH tRNA (Gm18) 2'-O-methyltransferase Basal machinery
trpA tryptophan synthase, α subunit 1.45
trpB tryptophan synthase, β subunit 1.45
trpC indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1.45
trpD anthranilate synthase component II 1.45
trpE anthranilate synthase component I 1.45
trpL trp operon leader peptide 1.45
trpR TrpR 1.45
trpS tryptophanyl-tRNA synthetase Basal machinery
truB tRNA pseudouridine 55 synthase 1.1
trxA thioredoxin 1 Basal machinery
trxC reduced thioredoxin 2 1.3
tsaD protein involved in threonylcarbamoyladenosine biosynthesis 1.1
tsaE protein involved in threonylcarbamoyladenosine biosynthesis Basal machinery
tsf protein chain elongation factor EF-Ts Basal machinery
tsgA predicted inner membrane transport protein implicated in the response to tellurite and selenite Basal machinery
tsr -- 1.1
tsx nucleoside channel; receptor of phage T6 and colicin K Intermodular
ttcA tRNA C32 thiolase Basal machinery
ttdA L-tartrate dehydratase, α subunit 34
ttdB L-tartrate dehydratase, β subunit 34
ttdR Dan 34
ttdT tartrate:succinate antiporter 34
tufA elongation factor Tu Basal machinery
tufB elongation factor Tu Basal machinery
tus DNA-binding protein; inhibition of replication at Ter sites Basal machinery
tusA sulfur transfer protein Basal machinery
tusB sulfur transfer protein complex, TusB subunit Basal machinery
tynA TynA Basal machinery
typA protein possibly involved in ribosome structure or function Basal machinery
tyrA TyrA 1.52
tyrB TyrB 1.52
tyrP tyrosine:H+ symporter TyrP Intermodular
tyrR TyrR DNA-binding transcriptional dual regulator 1.52
uacT urate:H+ symporter Basal machinery
ubiA 4-hydroxybenzoate octaprenyltransferase Basal machinery
ubiB predicted protein kinase involved in ubiquinone biosynthesis Basal machinery
ubiC chorismate lyase Basal machinery
ubiD 3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer Basal machinery
ubiE bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase Basal machinery
ubiG UbiG Basal machinery
ubiJ conserved protein involved in ubiquinone-8 biosynthesis Basal machinery
ubiX 3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG 1.32
udp Udp 1.39
ugd -- Basal machinery
ugpA glycerol-3-phosphate ABC transporter - membrane subunit 1.4
ugpB glycerol-3-phosphate ABC transporter - periplasmic binding protein 1.4
ugpC glycerol-3-phosphate ABC transporter - ATP binding subunit 1.4
ugpE glycerol-3-phosphate ABC transporter - membrane subunit 1.4
ugpQ glycerophosphodiester phosphodiesterase, cytosolic 1.4
uhpA UhpA transcriptional activator 1.61
uhpT hexose-6-phosphate:phosphate antiporter Intermodular
uidA β-D-glucuronidase Intermodular
uidB glucuronide:H+ symporter Intermodular
uidC membrane-associated protein Intermodular
uidR UidR DNA-binding transcriptional repressor 1.48
ulaA L-ascorbate PTS permease - UlaA subunit 11
ulaB L-ascorbate PTS permease - UlaB subunit 11
ulaC L-ascorbate PTS permease 11
ulaD 3-keto-L-gulonate 6-phosphate decarboxylase 11
ulaE L-xylulose 5-phosphate 3-epimerase 11
ulaF L-ribulose 5-phosphate 4-epimerase 11
ulaG L-ascorbate 6-phosphate lactonase 11
ulaR UlaR DNA-binding transcriptional repressor 11
umpG broad specificity 5'(3')-nucleotidase and polyphosphatase Basal machinery
umpH UMP phosphatase 1.5
umuC SOS mutagenesis and repair 1.14
umuD SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC 1.14
ung uracil-DNA glycosylase 1.1
uof RyhB-regulated fur leader peptide Intermodular
upp Upp Basal machinery
uppP -- 1.1
uraA uracil:H+ symporter UraA Basal machinery
ushA UDP-sugar hydrolase/5'-ribonucleotidase/5'-deoxyribonucleotidase Basal machinery
uspA universal stress global stress response regulator 1.11
uspB predicted universal stress (ethanol tolerance) protein B Basal machinery
uspC universal stress protein Basal machinery
uspD stress protein involved in resistance to UV irradiation Basal machinery
uspE universal stress protein with a role cellular motility 1.1
uvrA excision nuclease subunit A 1.14
uvrB DNA repair; excision nuclease subunit B 1.14
uvrC excinuclease ABC, subunit C; repair of UV damage to DNA 1.14
uvrD -- 1.14
uvrY UvrY transcriptional regulator 1.14
uxaA D-altronate dehydratase 1.9
uxaB altronate oxidoreductase 1.9
uxaC D-glucuronate isomerase/D-galacturonate isomerase 1.9
uxuA D-mannonate dehydratase Intermodular
uxuB D-mannonate oxidoreductase Intermodular
uxuR UxuR DNA-binding transcriptional repressor 1.9
valS valyl-tRNA synthetase Basal machinery
ves conserved protein Basal machinery
waaA KDO transferase Basal machinery
waaB UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase Basal machinery
waaF ADP-heptose:LPS heptosyltransferase II Basal machinery
waaH UDP-glucuronate:LPS(HepIII) glycosyltransferase 1.4
waaJ UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase Basal machinery
waaL O-antigen ligase Basal machinery
waaO UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase Basal machinery
waaP lipopolysaccharide core heptose (I) kinase Basal machinery
waaQ lipopolysaccharide core heptosyl transferase III Basal machinery
waaS lipopolysaccharide core biosynthesis protein Basal machinery
waaU lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase Basal machinery
waaY lipopolysaccharide core heptose (II) kinase 1.1
waaZ protein involved in KdoIII attachment during lipopolysaccharide core biosynthesis 1.1
wbbJ predicted acyl transferase 1.12
wbbK predicted lipopolysaccharide biosynthesis protein Basal machinery
wcaA predicted colanic acid biosynthesis glycosyl transferase 1.1
wcaB predicted colanic acid biosynthesis acyl transferase 1.1
wcaM predicted colanic acid biosynthesis protein Basal machinery
wecB -- Basal machinery
wecD -- Basal machinery
wecF -- Basal machinery
wrbA NAD(P)H:quinone oxidoreductase Intermodular
wza lipoprotein required for capsular polysaccharide translocation through the outer membrane 1.1
wzb protein-tyrosine phosphatase 1.1
wzc protein-tyrosine kinase 1.1
wzxC WzxC Basal machinery
wzxE lipid III flippase Basal machinery
wzyE predicted Wzy protein involved in ECA polysaccharide chain elongation Basal machinery
wzzB regulator of length of O-antigen component of lipopolysaccharide chains Basal machinery
wzzE Enterobacterial Common Antigen (ECA) polysaccharide chain length modulation protein Basal machinery
xanP xanthine:H+ symporter XanP Basal machinery
xanQ xanthine:H+ symporter XanQ Basal machinery
xapA xanthosine phosphorylase 35
xapB xanthosine:H+ symporter XapB 35
xapR XapR transcriptional activator 35
xdhA xanthine dehydrogenase subunit Basal machinery
xdhB xanthine dehydrogenase subunit, FAD-binding domain Basal machinery
xdhC xanthine dehydrogenase, Fe-S subunit Basal machinery
xerC site-specific tyrosine recombinase Basal machinery
xerD site-specific recombinase Basal machinery
xseA exonuclease VII, large subunit Basal machinery
xseB exonuclease VII, small subunit Basal machinery
xthA exonuclease III Basal machinery
xylA XylA 2
xylB xylulokinase 2
xylE xylose:H+ symporter Basal machinery
xylF xylose ABC transporter - periplasmic binding protein 2
xylG xylose ABC transporter - ATP binding subunit 2
xylH xylose ABC transporter - membrane subunit 2
xylR XylR transcriptional activator 2
yaaA protein that reduces intracellular iron levels under peroxide stress Basal machinery
yaaI predicted protein Basal machinery
yaaJ inner membrane protein YaaJ Basal machinery
yaaU predicted transporter YaaU Basal machinery
yaaW conserved protein Basal machinery
yaaX predicted protein Basal machinery
yacC predicted protein Basal machinery
yacH putative membrane protein Basal machinery
yadD predicted transposase Basal machinery
yadE predicted polysaccharide deacetylase lipoprotein Basal machinery
yadN predicted fimbrial-like adhesin protein Basal machinery
yadS conserved inner membrane protein Basal machinery
yadV probable pilin chaperone similar to PapD Basal machinery
yaeF predicted lipoprotein Basal machinery
yaeP conserved protein Basal machinery
yaeQ conserved protein Basal machinery
yaeR predicted lyase Basal machinery
yafC predicted DNA-binding transcriptional regulator LYSR-type Basal machinery
yafD conserved protein Basal machinery
yafE predicted S-adenosylmethionine-dependent methyltransferase Basal machinery
yafK conserved protein Basal machinery
yafL predicted lipoprotein and C40 family peptidase Basal machinery
yafN antitoxin of the YafO-YafN toxin-antitoxin system 1.14
yafO ribosome-dependent mRNA interferase, toxin of the YafO-YafN toxin-antitoxin system 1.14
yafP predicted acyltransferase with acyl-CoA N-acyltransferase domain 1.14
yafQ toxin of the YafQ-DinJ toxin-antitoxin system 1.14
yafS predicted S-adenosyl-L-methionine-dependent methyltransferase Basal machinery
yafT predicted aminopeptidase Basal machinery
yafU predicted inner membrane protein 1.12
yafW antitoxin of the YkfI-YafW toxin-antitoxin pair Basal machinery
yafX CP4-6 prophage; predicted protein Basal machinery
yagE CP4-6 prophage; probable 2-keto-3-deoxygluconate aldolase Basal machinery
yagF CP4-6 prophage; D-xylonate dehydratase Basal machinery
yagG YagG GPH Transporter Basal machinery
yagH CP4-6 prophage; predicted xylosidase/arabinosidase Basal machinery
yagI CP4-6 prophage; predicted DNA-binding transcriptional regulator Basal machinery
yagK CP4-6 prophage; conserved protein Basal machinery
yagL CP4-6 prophage; DNA-binding protein Basal machinery
yagN CP4-6 prophage; predicted protein Basal machinery
yahA phosphodiesterase, c-di-GMP-specific Basal machinery
yahC predicted inner membrane protein Basal machinery
yahE predicted protein Basal machinery
yahM predicted protein Basal machinery
yahN predicted neutral amino acid efflux system Basal machinery
yahO predicted protein 1.1
yaiA predicted protein Intermodular
yaiI conserved protein Basal machinery
yaiO outer membrane protein Basal machinery
yaiP predicted glucosyltransferase Basal machinery
yaiS conserved protein Basal machinery
yaiV predicted DNA-binding transcriptional regulator Basal machinery
yaiW surface exposed outer membrane lipoprotein Basal machinery
yaiY inner membrane protein Basal machinery
yaiZ predicted inner membrane protein 1.3
yajD conserved protein Basal machinery
yajI predicted lipoprotein Basal machinery
yajL chaperone, protecting proteins in response to oxidative stress Basal machinery
yajO putative NAD(P)H-dependent xylose reductase Basal machinery
ybaB conserved DNA-binding protein Basal machinery
ybaM small protein involved in the cell envelope stress response Basal machinery
ybaN conserved inner membrane protein Basal machinery
ybaO predicted DNA-binding transcriptional regulator 1.1
ybaP conserved protein Basal machinery
ybaQ predicted DNA-binding transcriptional regulator Basal machinery
ybaS glutaminase 1.1
ybaT YbaT APC transporter 1.1
ybaV periplasmic protein associated with repression of competance Basal machinery
ybaY predicted outer membrane lipoprotein 1.3
ybbB tRNA 2-selenouridine synthase Basal machinery
ybbC predicted protein Basal machinery
ybbD predicted protein Basal machinery
ybbJ conserved inner membrane protein Basal machinery
ybbN chaperone and weak protein oxidoreductase Basal machinery
ybbO NADP+-dependent aldehyde reductase Basal machinery
ybbW YbbW NCS1 Transporter 3
ybbY predicted uracil/xanthine transporter 3
ybcF predicted carbamate kinase Basal machinery
ybcH predicted protein Basal machinery
ybcI conserved inner membrane protein Basal machinery
ybcJ predicted RNA-binding protein Basal machinery
ybcK DLP12 prophage; predicted recombinase Basal machinery
ybcL DLP12 prophage; periplasmic protein Basal machinery
ybcM DLP12 prophage; predicted DNA-binding transcriptional regulator Basal machinery
ybcN DLP12 prophage; DNA base-flipping protein Basal machinery
ybcO DLP12 prophage; predicted protein Basal machinery
ybcQ DLP12 prophage; predicted antitermination protein Basal machinery
ybcW DLP12 prophage; predicted protein Basal machinery
ybdD conserved protein Basal machinery
ybdF conserved protein Basal machinery
ybdH predicted oxidoreductase Basal machinery
ybdJ predicted inner membrane protein Basal machinery
ybdK carboxylate-amine ligase Basal machinery
ybdL methionine-oxo-acid transaminase, PLP-dependent Basal machinery
ybdM conserved protein Basal machinery
ybdN conserved protein Basal machinery
ybdR predicted oxidoreductase, Zn-dependent and NAD(P)-binding Basal machinery
ybdZ MbtH-like protein that enhances the catalytic function of EntF Basal machinery
ybeD conserved protein Basal machinery
ybeF predicted DNA-binding transcriptional regulator, LYSR-type Basal machinery
ybeQ conserved protein Basal machinery
ybeR predicted protein Basal machinery
ybeT conserved outer membrane protein 1.1
ybeU predicted tRNA ligase Basal machinery
ybeX predicted ion transport protein Basal machinery
ybeY endoribonuclease involved in maturation of 16S rRNA and ribosome quality control Basal machinery
ybeZ predicted protein with nucleoside triphosphate hydrolase domain Basal machinery
ybfA predicted protein Basal machinery
ybfB predicted inner membrane protein 1.12
ybfE LexA-regulated protein 1.14
ybfF esterase Basal machinery
ybfG predicted protein Basal machinery
ybfH predicted protein Basal machinery
ybfN predicted lipoprotein 1.5
ybgA conserved protein Basal machinery
ybgC esterase/thioesterase Basal machinery
ybgD predicted fimbrial-like adhesin protein Basal machinery
ybgE conserved inner membrane protein Basal machinery
ybgF predicted periplasmic protein Basal machinery
ybgO predicted fimbrial-like adhesin protein Basal machinery
ybgS conserved protein Basal machinery
ybhA pyridoxal phosphatase/fructose 1,6-bisphosphatase Basal machinery
ybhB predicted kinase inhibitor Basal machinery
ybhD predicted DNA-binding transcriptional regulator Basal machinery
ybhH conserved protein Basal machinery
ybhK predicted transferase with NAD(P)-binding Rossmann-fold domain Basal machinery
ybhM conserved inner membrane protein Basal machinery
ybhN conserved inner membrane protein Basal machinery
ybiA conserved protein Basal machinery
ybiI conserved protein Basal machinery
ybiO mechanosensitive channel YbiO monomer Basal machinery
ybiR predicted transporter Basal machinery
ybiS L,D-transpeptidase YbiS 1.1
ybiT putative ATP-binding component of a transport system 1.17
ybiU predicted protein Basal machinery
ybiV sugar phosphatase Basal machinery
ybiW predicted pyruvate formate lyase Basal machinery
ybiX conserved protein Basal machinery
ybjC predicted inner membrane protein Intermodular
ybjE L-amino acid efflux transporter Basal machinery
ybjG undecaprenyl pyrophosphate phosphatase 1.1
ybjL predicted transporter Basal machinery
ybjM predicted inner membrane protein Basal machinery
ybjN predicted oxidoreductase Intermodular
ybjO predicted inner membrane protein Basal machinery
ybjP predicted lipoprotein Basal machinery
ybjS predicted NAD(P)H-binding oxidoreductase with NAD(P)-binding Rossmann-fold domain Basal machinery
ycaD YcaD MFS transporter Basal machinery
ycaI conserved inner membrane protein Basal machinery
ycaK conserved protein Basal machinery
ycaL putative heat shock protein Basal machinery
ycaM YcaM predicted APC amino acid transporter Basal machinery
ycaQ conserved protein Basal machinery
ycaR conserved protein Basal machinery
ycbF predicted periplasmic pilin chaperone Basal machinery
ycbU predicted fimbrial-like adhesin protein Basal machinery
ycbV predicted fimbrial-like adhesin protein Basal machinery
ycbZ putative ATP-dependent protease Basal machinery
yccA putative carrier/transport protein; substrate or modulator of FtsH-mediated proteolysis 1.1
yccE predicted protein Basal machinery
yccJ predicted protein 1.1
yccS predicted inner membrane protein Basal machinery
yccT conserved protein 1.1
yccX acylphosphatase Basal machinery
ycdT diguanylate cyclase Basal machinery
ycdU predicted inner membrane protein Basal machinery
ycdZ predicted inner membrane protein Basal machinery
yceF m7GTP pyrophosphatase Basal machinery
yceG protein involved in cytokinesis Basal machinery
yceH conserved protein Basal machinery
yceI predicted protein Basal machinery
yceJ predicted cytochrome b561 Basal machinery
yceM predicted oxidoreductase, NAD(P)-binding Rossmann-fold domain Basal machinery
yceO small protein involved in biofilm formation and acid stress response Basal machinery
yceQ predicted protein Basal machinery
ycfH predicted metallodependent hydrolase Basal machinery
ycfJ predicted protein Basal machinery
ycfK e14 prophage; predicted protein Basal machinery
ycfL predicted protein Basal machinery
ycfP conserved protein Basal machinery
ycfS L,D-transpeptidase YcfS 1.1
ycfT putative transport protein Basal machinery
ycfZ predicted inner membrane protein Basal machinery
ycgG conserved inner membrane protein Basal machinery
ycgJ predicted protein Basal machinery
ycgN conserved protein Basal machinery
ycgR molecular brake that regulates flagellar motility in response to c-di-GMP Basal machinery
ycgV putative adhesion and penetration protein Basal machinery
ycgX predicted protein Basal machinery
ycgY predicted protein Basal machinery
ycgZ predicted protein 22
ychA predicted transcriptional regulator Basal machinery
ychE predicted inner membrane protein Basal machinery
ychF ribosome-binding ATPase, inhibitor of catalase activity Basal machinery
ychH stress-induced protein Basal machinery
ychN conserved protein Basal machinery
ychO predicted invasin Basal machinery
ychQ predicted transcriptional regulator Basal machinery
yciA acyl-CoA thioesterase Basal machinery
yciB predicted inner membrane protein Basal machinery
yciC predicted inner membrane protein Basal machinery
yciE conserved protein 26
yciF putative structural protein 26
yciG predicted protein 26
yciH translation initiation factor Basal machinery
yciN predicted protein Basal machinery
yciT DNA-binding transcriptional regulator Basal machinery
yciU predicted protein Basal machinery
yciW predicted oxidoreductase Basal machinery
yciX predicted protein Basal machinery
yciZ hypothetical protein Basal machinery
ycjD conserved protein Basal machinery
ycjF conserved inner membrane protein Basal machinery
ycjM predicted glucosyltransferase Basal machinery
ycjN YcjN Basal machinery
ycjO YcjO Basal machinery
ycjP YcjP Basal machinery
ycjQ predicted oxidoreductase, Zn-dependent and NAD(P)-binding Basal machinery
ycjR predicted enzyme Basal machinery
ycjS predicted oxidoreductase, NADH-binding Basal machinery
ycjT predicted hydrolase Basal machinery
ycjU β-phosphoglucomutase Basal machinery
ycjV predicted sugar transporter subunit: ATP-binding component of ABC superfamily Basal machinery
ycjW predicted DNA-binding transcriptional regulator, LacI type Basal machinery
ycjX conserved protein Basal machinery
ycjY predicted hydrolase Basal machinery
ydaE Rac prophage; zinc-binding protein Basal machinery
ydaS Rac prophage; predicted DNA-binding transcriptional regulator Basal machinery
ydaT Rac prophage; predicted protein Basal machinery
ydaU Rac prophage; conserved protein Basal machinery
ydaV Rac prophage; predicted DNA replication protein Basal machinery
ydaW Rac prophage; predicted DNA-binding protein Basal machinery
ydaY Rac prophage; predicted protein Basal machinery
ydbC predicted oxidoreductase, NAD(P)-binding Basal machinery
ydbD protein involved in detoxification of methylglyoxal Basal machinery
ydbH predicted protein Basal machinery
ydbJ predicted protein Basal machinery
ydbK pyruvate:flavodoxin oxidoreductase 1.16
ydbL conserved protein Basal machinery
ydcA predicted protein Basal machinery
ydcF conserved protein Basal machinery
ydcI YdcI DNA-binding transcriptional repressor Basal machinery
ydcJ conserved protein Basal machinery
ydcK predicted enzyme Basal machinery
ydcL predicted lipoprotein Basal machinery
ydcN predicted DNA-binding transcriptional regulator Basal machinery
ydcP predicted peptidase Basal machinery
ydcS YdcS Basal machinery
ydcT YdcT Basal machinery
ydcU YdcU Basal machinery
ydcV YdcV Basal machinery
ydcW -- Basal machinery
ydcX predicted inner membrane protein Basal machinery
ydcY hypothetical protein Basal machinery
ydcZ predicted inner membrane protein Basal machinery
yddB predicted porin protein Basal machinery
yddE conserved protein Basal machinery
yddG aromatic amino acid exporter Basal machinery
yddJ hypothetical protein Basal machinery
yddL predicted lipoprotein 1.12
yddW predicted lipoprotein Basal machinery
ydeA arabinose efflux transporter Basal machinery
ydeE predicted transport protein YdeE Basal machinery
ydeI stress response protein Basal machinery
ydeJ conserved protein Basal machinery
ydeN putative sulfatase 1.5
ydeO YdeO DNA-binding transcriptional dual regulator 1.1
ydeP acid resistance protein Intermodular
ydeR predicted fimbrial-like adhesin protein Basal machinery
ydfA Qin prophage; predicted protein Basal machinery
ydfB Qin prophage; small protein Basal machinery
ydfD Qin prophage; predicted protein 16
ydfE Qin prophage; predicted protein 16
ydfK Qin prophage; cold shock gene, predicted DNA-binding transcriptional regulator Basal machinery
ydfN Qin prophage; predicted side tail fibre assembly protein Basal machinery
ydfO Qin prophage; predicted protein Basal machinery
ydgC hypothetical protein Basal machinery
ydgD predicted peptidase Basal machinery
ydgH predicted protein Basal machinery
ydgJ predicted oxidoreductase Basal machinery
ydhB protein with similarity to transcriptional regulators Basal machinery
ydhC predicted transport protein YdhC Basal machinery
ydhF predicted oxidoreductase Basal machinery
ydhI predicted inner membrane protein Basal machinery
ydhJ conserved protein Basal machinery
ydhK conserved inner membrane protein Basal machinery
ydhL conserved protein Basal machinery
ydhQ conserved protein Basal machinery
ydhS conserved protein with FAD/NAD(P)-binding domain Basal machinery
ydhT conserved protein 1.33
ydhU predicted cytochrome Intermodular
ydhV predicted oxidoreductase 1.33
ydhW predicted protein 1.33
ydhX predicted 4Fe-4S ferredoxin-type protein 1.33
ydhY predicted 4Fe-4S ferredoxin-type protein 1.33
ydhZ predicted protein Basal machinery
ydiE conserved protein Basal machinery
ydiH predicted protein Basal machinery
ydiM predicted transporter Basal machinery
ydiN uncharacterised inner membrane protein YdiN Basal machinery
ydiU conserved protein 1.16
ydiV anti-FlhDC factor 1.1
ydiY conserved protein Basal machinery
ydjE YdjE MFS transporter Basal machinery
ydjF predicted DNA-binding transcriptional regulator Basal machinery
ydjM predicted inner membrane protein regulated by LexA 1.14
ydjO predicted protein Basal machinery
ydjX predicted inner membrane protein Basal machinery
ydjY predicted protein Basal machinery
ydjZ conserved inner membrane protein Basal machinery
yeaC conserved protein 1.16
yeaD conserved protein Basal machinery
yeaE methylglyoxal reductase Basal machinery
yeaG protein kinase 1.1
yeaH conserved protein 1.1
yeaI predicted diguanylate cyclase Basal machinery
yeaJ predicted diguanylate cyclase Basal machinery
yeaM predicted DNA-binding transcriptional regulator Basal machinery
yeaN putative amino acid/amine MFS transporter Basal machinery
yeaO conserved protein Basal machinery
yeaP diguanylate cyclase Basal machinery
yeaQ conserved inner membrane protein Basal machinery
yeaR conserved protein 1.33
yeaY predicted lipoprotein Basal machinery
yebA -- Basal machinery
yebB predicted protein 1.12
yebC conserved protein Basal machinery
yebE conserved inner membrane protein 1.1
yebG conserved protein regulated by LexA 1.14
yebK predicted DNA-binding transcriptional regulator Basal machinery
yebQ predicted transporter Basal machinery
yebS conserved inner membrane protein Basal machinery
yebT conserved protein Basal machinery
yebV predicted protein Basal machinery
yebW predicted protein Basal machinery
yecC predicted transporter subunit: ATP-binding component of ABC superfamily Basal machinery
yecD predicted hydrolase Basal machinery
yecE conserved protein Basal machinery
yecF predicted protein Basal machinery
yecH predicted protein Basal machinery
yecJ predicted protein Basal machinery
yecM predicted metal-binding enzyme Basal machinery
yecR predicted protein Basal machinery
yecT predicted protein Basal machinery
yedD predicted protein Basal machinery
yedE predicted inner membrane protein Basal machinery
yedF conserved protein Basal machinery
yedI conserved inner membrane protein Basal machinery
yedJ predicted phosphohydrolase Basal machinery
yedM conserved protein 1.12
yedV predicted sensory kinase in two-component regulatory system with YedW Basal machinery
yedX conserved protein Basal machinery
yedY reductase Basal machinery
yedZ conserved inner membrane protein Basal machinery
yeeA conserved inner membrane protein Basal machinery
yeeJ adhesin Basal machinery
yeeN conserved protein Basal machinery
yeeO YeeO MATE transporter Basal machinery
yeeX conserved protein Basal machinery
yeeZ predicted epimerase, with NAD(P)-binding Rossmann-fold domain Basal machinery
yefM YefM antitoxin of the YoeB-YefM toxin-antitoxin pair and DNA binding transcriptional repressor 68
yegD actin family protein Basal machinery
yegI conserved protein Basal machinery
yegJ predicted protein Basal machinery
yegQ predicted peptidase Basal machinery
yegR predicted protein 1.1
yegS lipid kinase Basal machinery
yegX predicted hydrolase Basal machinery
yehA putative type-1 fimbrial protein Basal machinery
yehE predicted protein Basal machinery
yehK predicted protein Basal machinery
yehL predicted transporter subunit: ATP-binding component of ABC superfamily Basal machinery
yehM predicted protein Basal machinery
yehP conserved protein Basal machinery
yehQ predicted protein Basal machinery
yehR conserved protein Basal machinery
yehT YehT 67
yehW YehW Basal machinery
yehX YehX Basal machinery
yehY YehY Basal machinery
yeiB conserved inner membrane protein 1.13
yeiE LYSR-type transcriptional regulator Basal machinery
yeiG -- Basal machinery
yeiH conserved inner membrane protein Basal machinery
yeiI predicted kinase Basal machinery
yeiL YeiL DNA-binding transcriptional activator Basal machinery
yeiP predicted dehydrogenase, NAD-dependent Basal machinery
yeiQ predicted dehydrogenase, NAD-dependent Basal machinery
yeiR zinc-binding GTPase Basal machinery
yeiS predicted inner membrane protein Basal machinery
yeiW conserved protein Basal machinery
yejA peptide ABC transporter - periplasmic binding protein 24
yejB peptide ABC transporter - membrane subunit 24
yejE peptide ABC transporter - membrane subunit 24
yejF peptide ABC transporter - ATP binding subunit 24
yejG predicted protein Basal machinery
yejH predicted ATP-dependent helicase Basal machinery
yejK nucleoid-associated protein Basal machinery
yfaD conserved protein Basal machinery
yfaE 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance Intermodular
yfaL adhesin Basal machinery
yfaP conserved protein Basal machinery
yfaU 2-keto-3-deoxy-L-rhamnonate aldolase Basal machinery
yfaZ predicted outer membrane porin protein Basal machinery
yfbK putative lipoprotein Basal machinery
yfbL predicted peptidase Basal machinery
yfbN predicted protein Basal machinery
yfbO predicted protein Basal machinery
yfbP predicted protein Basal machinery
yfbR dCMP phosphohydrolase Basal machinery
yfcI conserved protein Basal machinery
yfcJ predicted transport protein YfcJ Basal machinery
yfcL predicted protein Basal machinery
yfcN -- Basal machinery
yfcV predicted fimbrial-like adhesin protein Basal machinery
yfdF predicted protein Basal machinery
yfdG CPS-53 (KpLE1) prophage; predicted bactoprenol-linked glucose translocase (flippase) Basal machinery
yfdH CPS-53 (KpLE1) prophage; bactoprenyl glucosyl transferase Basal machinery
yfdI CPS-53 (KpLE1) prophage; predicted inner membrane protein Basal machinery
yfdP CPS-53 (KpLE1) prophage; predicted protein Basal machinery
yfdQ CPS-53 (KpLE1) prophage; predicted protein Basal machinery
yfdX predicted protein 1.1
yfdY predicted inner membrane protein Basal machinery
yfeA predicted diguanylate cyclase Basal machinery
yfeC predicted DNA-binding transcriptional regulator Basal machinery
yfeD predicted DNA-binding transcriptional regulator Basal machinery
yfeH putative cytochrome oxidase Basal machinery
yfeK predicted protein Basal machinery
yfeO predicted ion channel protein Basal machinery
yfeR predicted DNA-binding transcriptional regulator, LYSR-type Basal machinery
yfeS conserved protein Basal machinery
yfeX porphyrinogen peroxidase Basal machinery
yfeY predicted outer membrane lipoprotein Basal machinery
yfeZ predicted inner membrane protein Basal machinery
yffB conserved protein Basal machinery
yffO CPZ-55 prophage; predicted protein Basal machinery
yffP CPZ-55 prophage; predicted protein Basal machinery
yffQ CPZ-55 prophage; predicted protein Basal machinery
yffR CPZ-55 prophage; predicted protein Basal machinery
yffS CPZ-55 prophage; predicted protein Basal machinery
yfgD predicted oxidoreductase Basal machinery
yfgF cyclic di-GMP phosphodiesterase Basal machinery
yfgG predicted protein Basal machinery
yfgH predicted lipoprotein Basal machinery
yfgI conserved protein, involved in DNA damage response Basal machinery
yfhH predicted DNA-binding transcriptional regulator Basal machinery
yfhR predicted peptidase Basal machinery
yfiB predicted outer membrane lipoprotein Basal machinery
yfiC tRNA m6A37 methyltransferase Basal machinery
yfiE predicted DNA-binding transcriptional regulator LYSR-type Basal machinery
yfiL putative lipoprotein Basal machinery
yfiM predicted protein Basal machinery
yfiN predicted diguanylate cyclase Basal machinery
yfiR predicted periplasmic protein involved in swarming motility Basal machinery
yfjH CP4-57 prophage; predicted protein Basal machinery
yfjI CP4-57 prophage; predicted protein Basal machinery
yfjJ CP4-57 prophage; predicted protein Basal machinery
yfjM CP4-57 prophage; predicted protein Basal machinery
yfjP CP4-57 prophage; predicted GTP-binding protein Basal machinery
yfjQ CP4-57 prophage; predicted protein Basal machinery
yfjV -- Basal machinery
yfjW CP4-57 prophage; predicted inner membrane protein Basal machinery
yfjX CP4-57 prophage; predicted antirestriction protein Basal machinery
yfjY CP4-57 prophage; predicted DNA repair protein Basal machinery
yfjZ CP4-57 prophage; predicted antitoxin of the YpjF-YfjZ toxin-antitoxin system Basal machinery
ygaC predicted protein Basal machinery
ygaH L-valine efflux transporter - YgaH subunit Basal machinery
ygaU predicted protein Basal machinery
ygaZ L-valine efflux transporter - YgaZ subunit Basal machinery
ygbA predicted protein Basal machinery
ygbE conserved inner membrane protein Basal machinery
ygbI predicted DNA-binding transcriptional regulator, DEOR-type Basal machinery
ygbK conserved protein Basal machinery
ygbL predicted class II aldolase Basal machinery
ygbM conserved protein Basal machinery
ygbN YgbN Gnt transporter Basal machinery
ygcE predicted kinase Basal machinery
ygcG predicted protein Basal machinery
ygcN predicted oxidoreductase with FAD/NAD(P)-binding domain Basal machinery
ygcO predicted 4Fe-4S cluster-containing protein Basal machinery
ygcP predicted anti-terminator regulatory protein Basal machinery
ygcU predicted FAD-containing dehydrogenase Basal machinery
ygcW predicted deoxygluconate dehydrogenase Basal machinery
ygdB predicted protein Basal machinery
ygdD conserved inner membrane protein Basal machinery
ygdG flap endonuclease Basal machinery
ygdI putative lipoprotein Basal machinery
ygdQ putative transport protein 1.1
ygdR predicted protein Basal machinery
ygeA predicted racemase Basal machinery
ygeF predicted protein 1.12
ygeG predicted chaperone 1.12
ygeH predicted transcriptional regulator Basal machinery
ygeI predicted protein 1.12
ygeK predicted DNA-binding transcriptional regulator 1.12
ygeM predicted protein 1.12
ygeR putative lipoprotein; predicted DNA-binding transcriptional regulator Basal machinery
ygeW predicted carbamoyltransferase Basal machinery
ygfA -- Basal machinery
ygfK predicted oxidoreductase, Fe-S subunit Basal machinery
ygfS predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit Basal machinery
yggC conserved protein with nucleoside triphosphate hydrolase domain Basal machinery
yggE conserved protein Basal machinery
yggI conserved protein Basal machinery
yggL predicted protein Basal machinery
yggM conserved protein Basal machinery
yggN predicted protein Basal machinery
yggW predicted oxidoreductase Basal machinery
yghA NADP+-dependent aldehyde reductase Basal machinery
yghD predicted secretion pathway protein, M-type protein, membrane anchored Basal machinery
yghF predicted secretion pathway protein, C-type protein Basal machinery
yghJ predicted lipoprotein Basal machinery
yghQ predicted inner membrane protein Basal machinery
yghT predicted protein with nucleoside triphosphate hydrolase domain Basal machinery
yghW predicted protein Basal machinery
ygiA predicted protein 1.1
ygiB conserved outer membrane protein 1.1
ygiC predicted enzyme with ATPase activity 1.1
ygiD predicted dioxygenase Basal machinery
ygiH conserved inner membrane protein Basal machinery
ygiL predicted fimbrial-like adhesin protein Basal machinery
ygiM predicted signal transduction protein (SH3 domain) Basal machinery
ygiN quinol monooxygenase Basal machinery
ygiQ conserved protein Basal machinery
ygiS predicted transporter subunit Basal machinery
ygiV YgiV DNA-binding transcriptional repressor Basal machinery
ygiW stress-induced protein Basal machinery
ygiZ conserved inner membrane protein Basal machinery
ygjH putative tRNA synthetase Basal machinery
ygjI YgjI APC transporter Basal machinery
ygjQ conserved protein Basal machinery
ygjV inner membrane protein Basal machinery
yhaB predicted protein Basal machinery
yhaC predicted protein 1.12
yhaH putative cytochrome Basal machinery
yhaI predicted inner membrane protein Basal machinery
yhaJ predicted DNA-binding transcriptional regulator LYSR-type Basal machinery
yhaK bicupin-related protein Basal machinery
yhaL predicted protein Basal machinery
yhaV YhaV toxic endonuclease Basal machinery
yhbQ predicted endonuclease Basal machinery
yhbS predicted acyltransferase with acyl-CoA N-acyltransferase domain 1.1
yhbT predicted lipid carrier protein 1.1
yhbU predicted peptidase (collagenase-like) Basal machinery
yhbV predicted protease Basal machinery
yhbX predicted hydrolase, inner membrane Basal machinery
yhcA predicted periplasmic chaperone protein Basal machinery
yhcC predicted Fe-S oxidoreductase Basal machinery
yhcD predicted outer membrane protein Basal machinery
yhcF predicted transcriptional regulator Basal machinery
yhcH conserved protein 1.25
yhcN stress-induced protein Basal machinery
yhcO predicted barnase inhibitor Basal machinery
yhdH acrylyl-CoA reductase Basal machinery
yhdJ DNA adenine methyltransferase Basal machinery
yhdN conserved protein Basal machinery
yhdT conserved inner membrane protein Basal machinery
yhdU predicted membrane protein Basal machinery
yhdV predicted outer membrane lipoprotein Basal machinery
yhdW YhdW 1.1
yhdX YhdX 1.1
yhdY YhdY 1.1
yhdZ YhdZ 1.1
yheV predicted protein Basal machinery
yhfA conserved protein Basal machinery
yhfL conserved secreted peptide Basal machinery
yhfY conserved protein Basal machinery
yhgA predicted transposase Basal machinery
yhgE putative transport protein Basal machinery
yhgF predicted transcriptional accessory protein Basal machinery
yhhA conserved protein Basal machinery
yhhI predicted transposase Basal machinery
yhhJ predicted transporter subunit: membrane component of ABC superfamily Basal machinery
yhhL conserved inner membrane protein Basal machinery
yhhM putative receptor Basal machinery
yhhN conserved inner membrane enzyme Basal machinery
yhhQ conserved inner membrane protein Basal machinery
yhhT predicted inner membrane protein Basal machinery
yhhX predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain Basal machinery
yhhY predicted acetyltransferase Basal machinery
yhhZ conserved protein Basal machinery
yhiD predicted Mg(2+) transport ATPase 1.1
yhiJ predicted protein Basal machinery
yhiL predicted protein 1.12
yhiM inner membrane protein with a role in acid resistance Intermodular
yhiN predicted oxidoreductase with FAD/NAD(P)-binding domain Basal machinery
yhjA predicted cytochrome C peroxidase 1.3
yhjB predicted DNA-binding response regulator in two-component regulatory system Basal machinery
yhjC predicted DNA-binding transcriptional regulator Basal machinery
yhjD inner membrane protein associated with lipopolysaccharide transport Basal machinery
yhjE YhjE MFS transporter Basal machinery
yhjG predicted outer membrane biogenesis protein Basal machinery
yhjH c-di-GMP phosphodiesterase Basal machinery
yhjJ predicted zinc-dependent peptidase Basal machinery
yhjK predicted c-di-GMP phosphodiesterase Basal machinery
yhjR conserved protein Basal machinery
yhjV YhjV STP transporter Basal machinery
yhjX inner membrane protein - predicted transporter Basal machinery
yhjY conserved protein Basal machinery
yiaA conserved inner membrane protein Basal machinery
yiaB conserved inner membrane protein Basal machinery
yiaD predicted outer membrane lipoprotein Basal machinery
yiaG predicted transcriptional regulator Basal machinery
yiaJ YiaJ DNA-binding transcriptional repressor 1.28
yiaK 2,3-diketo-L-gulonate reductase monomer 1.28
yiaL conserved protein Intermodular
yiaM 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit 1.28
yiaN 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit 1.28
yiaO 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein 1.28
yiaT putative outer membrane protein Basal machinery
yiaU predicted DNA-binding transcriptional regulator, LysR-type Basal machinery
yiaY L-threonine dehydrogenase Basal machinery
yibA predicted lyase containing HEAT-repeat Basal machinery
yibG conserved protein 1.12
yibL conserved protein Basal machinery
yibN predicted rhodanese-related sulfurtransferase Basal machinery
yibQ putative nucleoside (IDP) diphosphatase Basal machinery
yibT predicted protein Basal machinery
yicI α-xylosidase Basal machinery
yicJ YicJ GPH transporter Basal machinery
yicN conserved protein Basal machinery
yidB conserved protein Basal machinery
yidE predicted transporter Basal machinery
yidF predicted DNA-binding transcriptional regulator Basal machinery
yidQ conserved outer membrane protein 1.1
yidR conserved protein Basal machinery
yieE predicted phosphopantetheinyl transferase Basal machinery
yieF chromate reductase monomer Basal machinery
yieH 6-phosphogluconate phosphatase Basal machinery
yieK predicted 6-phosphogluconolactonase Basal machinery
yifB predicted ATP-dependent protease Basal machinery
yifK YifK APC transporter 1.12
yifL predicted lipoprotein Basal machinery
yigA conserved protein Basal machinery
yigB 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase Basal machinery
yigF conserved inner membrane protein Basal machinery
yigL phosphosugar phosphatase Basal machinery
yigM predicted inner membrane protein Basal machinery
yihA cell division protein; predicted checkpoint GTPase Basal machinery
yihF putative GTP-binding protein Basal machinery
yihG predicted endonuclease Basal machinery
yihI GAP-like protein that activates GTPase activity of Der Basal machinery
yihL YihL putative transcriptional regulator Basal machinery
yihM conserved protein Basal machinery
yihN YihN MFS transporter Basal machinery
yihO sulfoquinovose transporter Basal machinery
yihQ α-glucosidase Basal machinery
yihV 6-deoxy-6-sulfofructose kinase Basal machinery
yihW predicted DNA-binding transcriptional regulator Basal machinery
yiiE predicted transcriptional regulator Basal machinery
yiiF conserved protein Basal machinery
yiiG conserved protein Basal machinery
yiiM protein involved in base analog detoxification Basal machinery
yiiQ conserved protein Basal machinery
yiiS conserved protein Basal machinery
yijE predicted permease Basal machinery
yijF conserved protein Basal machinery
yijO predicted DNA-binding transcriptional regulator Basal machinery
yjaA stress response protein Basal machinery
yjaB predicted acetyltransferase Basal machinery
yjaG conserved protein Basal machinery
yjaH conserved protein Basal machinery
yjaZ conserved protein Basal machinery
yjbE predicted protein 1.1
yjbF predicted lipoprotein 1.1
yjbG conserved protein 1.1
yjbH predicted porin 1.1
yjbL predicted protein Basal machinery
yjbM predicted protein 1.12
yjcC predicted c-di-GMP-specific phosphodiesterase Basal machinery
yjcE YjcE CPA1 transporter Basal machinery
yjcF conserved protein Basal machinery
yjcH conserved inner membrane protein 1.1
yjcO conserved protein Basal machinery
yjcS alkyl sulfatase Basal machinery
yjcZ conserved protein Basal machinery
yjdM conserved protein Basal machinery
yjeF NAD(P)HX epimerase / NAD(P)HX dehydratase Basal machinery
yjeJ predicted protein Basal machinery
yjeV small protein 1.4
yjfF galactofuranose / galactospyranose ABC transporter - putative membrane subunit Basal machinery
yjfP esterase Basal machinery
yjfY predicted protein Basal machinery
yjfZ predicted protein Basal machinery
yjgA putative alpha-helix protein Basal machinery
yjgL predicted protein Basal machinery
yjgM predicted acetyltransferase Basal machinery
yjgN conserved inner membrane protein Basal machinery
yjgR predicted ATPase Basal machinery
yjgZ KpLE2 phage-like element; predicted protein Basal machinery
yjhB YjhB MFS transporter Basal machinery
yjhC KpLE2 phage-like element; predicted oxidoreductase Basal machinery
yjhG KpLE2 phage-like element; D-xylonate dehydratase Basal machinery
yjhH KpLE2 phage-like element; 2-dehydro-3-deoxy-D-pentonate aldolase Basal machinery
yjhI KpLE2 phage-like element; predicted DNA-binding transcriptional regulator Basal machinery
yjhU KpLE2 phage-like element; predicted DNA-binding transcriptional regulator Basal machinery
yjiA P-loop guanosine triphosphatase Basal machinery
yjiJ predicted inner membrane protein Basal machinery
yjiK conserved protein Basal machinery
yjiL predicted ATPase, activator of (R)-hydroxyglutaryl-CoA dehdratase Basal machinery
yjiS conserved protein Basal machinery
yjiT conserved protein Basal machinery
yjiY inner membrane protein - predicted transporter 67
yjjA conserved protein Basal machinery
yjjJ predicted DNA-binding transcriptional regulator Basal machinery
yjjP predicted inner membrane structural protein Basal machinery
yjjQ predicted DNA-binding transcriptional regulator 1.1
yjjX ITPase/XTPase Basal machinery
yjjY predicted protein Basal machinery
yjjZ predicted protein Basal machinery
yjtD predicted rRNA methyltransferase Basal machinery
ykfB CP4-6 prophage; predicted protein 1.1
ykfF CP4-6 prophage; predicted protein Basal machinery
ykfG CP4-6 prophage; predicted DNA repair protein Basal machinery
ykfH predicted protein Basal machinery
ykfI CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system Basal machinery
ykgE predicted oxidoreductase Basal machinery
ykgF predicted amino acid dehydrogenase with NAD(P)-binding domain and ferridoxin-like domain Basal machinery
ykgG predicted transporter Basal machinery
ykgJ predicted ferredoxin Basal machinery
ykgL predicted protein Basal machinery
ykgM predicted ribosomal protein 1.51
ykgO predicted ribosomal protein 1.51
ykgR small membrane protein Basal machinery
ylbE_1 predicted protein, N-ter fragment Basal machinery
ylbE_2 predicted protein, C-ter fragment Basal machinery
ylbF conserved protein Basal machinery
ylbH conserved protein, rhs-like Basal machinery
ylcG DLP12 prophage; small protein Basal machinery
yliE predicted c-di-GMP-specific phosphodiesterase Basal machinery
yliF predicted diguanylate cyclase Basal machinery
ymcE YmcE Basal machinery
ymdA predicted protein Basal machinery
ymdB O-acetyl-ADP-ribose deacetylase, regulator of RNase III activity Basal machinery
ymfD e14 prophage; predicted SAM-dependent methyltransferase Basal machinery
ymfI e14 prophage; predicted protein Basal machinery
ymfJ e14 prophage; predicted protein Basal machinery
ymfK e14 prophage; predicted repressor protein Basal machinery
ymfL e14 prophage; predicted DNA-binding transcriptional regulator Basal machinery
ymfM e14 prophage; predicted protein Basal machinery
ymfN e14 prophage; predicted DNA-binding transcriptional regulator Basal machinery
ymfO e14 prophage; conserved protein Basal machinery
ymfP e14 prophage; conserved protein Basal machinery
ymfQ e14 prophage; conserved protein Basal machinery
ymfR e14 prophage; predicted protein Basal machinery
ymfS e14 prophage; predicted protein Basal machinery
ymfT e14 prophage; predicted DNA-binding transcriptional regulator Basal machinery
ymgA protein involved in biofilm formation 22
ymgC protein involved in biofilm formation 22
ymgE predicted inner membrane protein Basal machinery
ymgF inner membrane protein that interacts with cell division proteins Basal machinery
ymgG predicted protein 1.12
ymiA small predicted membrane protein Basal machinery
ymjA predicted protein Basal machinery
ynaK Rac prophage; conserved protein Basal machinery
ynbA predicted inner membrane protein Basal machinery
ynbB predicted CDP-diglyceride synthase Basal machinery
ynbC predicted hydrolase Basal machinery
ynbD predicted phosphatase, inner membrane protein Basal machinery
ynbE predicted lipoprotein Basal machinery
yncD probable TonB-dependent receptor Basal machinery
yncE conserved protein 1.1
yncH hypothetical protein 1.12
yncL small membrane protein Basal machinery
yneE conserved inner membrane protein Basal machinery
yneF predicted diguanylate cyclase Basal machinery
yneJ predicted DNA-binding transcriptional regulator, LysR-type Basal machinery
yneK predicted protein Basal machinery
yneM small membrane protein 1.1
ynfA conserved inner membrane protein Basal machinery
ynfC YnfC lipoprotein Basal machinery
ynfD predicted protein Basal machinery
ynfE oxidoreductase subunit Basal machinery
ynfF oxidoreductase subunit Basal machinery
ynfG oxidoreductase, predicted Fe-S subunit Basal machinery
ynfH oxidoreductase, predicted membrane anchor subunit Basal machinery
ynfK predicted dethiobiotin synthetase 1.10
ynfL predicted DNA-binding transcriptional regulator Basal machinery
ynfM predicted transport protein YnfM Basal machinery
ynfN Qin prophage; predicted protein Basal machinery
ynfO Qin prophage; predicted protein Basal machinery
ynhG L,D-transpeptidase YnhG Basal machinery
yniA predicted phosphotransferase/kinase Basal machinery
yniD small predicted membrane protein Basal machinery
ynjA conserved protein Basal machinery
ynjB conserved protein Basal machinery
ynjC YnjC Basal machinery
ynjD YnjD Basal machinery
ynjF predicted phosphatidyl transferase, inner membrane protein Basal machinery
ynjH predicted protein Basal machinery
ynjI predicted inner membrane protein Basal machinery
yoaB conserved protein Basal machinery
yoaC predicted protein Basal machinery
yoaE predicted inner membrane protein Basal machinery
yoaF conserved outer membrane protein Basal machinery
yoaG predicted protein 1.33
yoaH conserved protein Basal machinery
yobA conserved protein 1.53
yobB conserved protein Basal machinery
yobF small protein involved in stress responses 1.3
yobH predicted protein Basal machinery
yodB predicted cytochrome Basal machinery
yodC predicted protein Basal machinery
yoeB toxin of the YoeB-YefM toxin-antitoxin pair 68
yohC predicted inner membrane protein Basal machinery
yohD conserved inner membrane protein Basal machinery
yohJ conserved inner membrane protein Basal machinery
yohK inner membrane protein YohK Basal machinery
yohO small predicted membrane protein Basal machinery
yojI fused predicted multidrug transport subunits of ABC superfamily: membrane component / ATP-binding component Basal machinery
ypaA -- Basal machinery
ypdI YpdI colanic acid synthesis lipoprotein Basal machinery
ypfG predicted protein Basal machinery
ypfM small protein Basal machinery
ypfN predicted protein Basal machinery
yphB conserved protein Basal machinery
ypjA adhesin-like autotransporter Basal machinery
ypjC predicted protein 1.12
ypjD predicted inner membrane protein Basal machinery
ypjF CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system Basal machinery
ypjJ CP4-57 prophage; predicted protein Basal machinery
yqaE predicted membrane protein 1.22
yqcA predicted flavoprotein Basal machinery
yqcE YqcE MFS transporter Basal machinery
yqeC conserved protein Basal machinery
yqeF predicted acyltransferase Basal machinery
yqeG YqeG STP transporter Basal machinery
yqeH conserved protein with bipartite regulator domain Basal machinery
yqeI predicted transcriptional regulator Basal machinery
yqeJ predicted protein Basal machinery
yqeK predicted protein 1.12
yqfA predicted oxidoreductase, inner membrane subunit Basal machinery
yqgA putative transport protein Basal machinery
yqgB small protein involved in the acid stress response Basal machinery
yqgE predicted protein Basal machinery
yqgF predicted transcription antitermination factor Basal machinery
yqhA conserved inner membrane protein Basal machinery
yqhC YqhC DNA-binding transcriptional activator 38
yqhD NADPH-dependent aldehyde reductase 38
yqhH predicted outer membrane lipoprotein Basal machinery
yqiC conserved protein Basal machinery
yqiG predicted outer membrane usher protein Basal machinery
yqiH predicted periplasmic pilin chaperone Basal machinery
yqiI protein involved in detoxification of methylglyoxal Basal machinery
yqiJ predicted inner membrane protein Basal machinery
yqiK conserved protein Basal machinery
yqjA membrane transport protein; required for proton-motive force (PMF) dependent drug efflux 1.1
yqjF predicted quinol oxidase subunit Basal machinery
yqjG S-glutathionyl-(chloro)hydroquinone reductase Basal machinery
yqjH ferric reductase, NADPH-dependent 58
yqjI YqjI DNA-binding transcriptional repressor 58
yraH predicted fimbrial-like adhesin protein Basal machinery
yraP lipoprotein Basal machinery
yraQ predicted permease Basal machinery
yraR predicted nucleoside-diphosphate-sugar epimerase Basal machinery
yrbG inner membrane protein YrbG Basal machinery
yrbL predicted protein 1.1
yrbN small protein Basal machinery
yrdA conserved protein Basal machinery
yrdB conserved protein Basal machinery
yrfF predicted inner membrane protein Basal machinery
yrfG purine nucleotidase Basal machinery
yrhA conserved protein 1.12
yrhB predicted protein with chaperone-like activity Basal machinery
ysaB predicted protein Basal machinery
ysgA predicted hydrolase Basal machinery
ytfE protein involved in repair of stress-damaged iron-sulfur clusters 1.33
ytfF inner membrane protein Basal machinery
ytfH predicted transcriptional regulator Basal machinery
ytfI predicted protein Basal machinery
ytfJ conserved protein Basal machinery
ytfK conserved protein Basal machinery
ytfL predicted inner membrane protein Basal machinery
ytfP conserved protein Basal machinery
ytfQ galactofuranose / galactopyranose ABC transporter - periplasmic binding protein Basal machinery
ytfR galactofuranose / galactopyranose ABC transporter - putative ATP binding subunit Basal machinery
ytfT galactofuranose / galactopyranose ABC transporter - putative membrane subunit Basal machinery
zapA cell division factor ZapA, localizes to the cytokinetic ring Basal machinery
zapB cell division factor ZapB Basal machinery
zapC cell division factor ZapC, localizes to the cytokinetic ring Basal machinery
zapE cell division factor ZapE with ATPase activity Basal machinery
zinT cadmium-induced cadmium binding protein Intermodular
zipA essential cell division protein ZipA Basal machinery
zitB Zn2+ / Cd2+ / Ni2+ / Cu2+ efflux transporter ZitB Basal machinery
zntA zinc, cadmium and lead efflux system 54
zntR ZntR transcriptional activator 54
znuA Zn2+ ABC transporter - periplasmic binding protein 1.51
znuB Zn2+ ABC transporter - membrane subunit 1.51
znuC Zn2+ ABC transporter - ATP binding subunit 1.51
zraP zinc homeostasis protein 43
zraR ZraR transcriptional activator 43
zraS ZraS sensory histidine kinase 43
zur Zur 1.51
zwf glucose 6-phosphate-1-dehydrogenase 1.1