Escherichia coli (strain UTI89 / UPEC)

Basal machinery genes
Gene Product description
aceB malate synthase
acnB bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
adhE bifunctional acetaldehyde-CoA/alcohol dehydrogenase
aegA putative oxidoreductase Fe-S binding subunit
araB ribulokinase
bolA transcriptional regulator BolA
caiA crotonobetainyl-CoA dehydrogenase
caiC putative crotonobetaine/carnitine-CoA ligase
caiD carnitinyl-CoA dehydratase
caiE carnitine operon protein CaiE
caiT L-carnitine/gamma-butyrobetaine antiporter
cfa cyclopropane fatty acyl phospholipid synthase
cirA colicin I receptor
cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
cyaA adenylate cyclase
cydA cytochrome d terminal oxidase, polypeptide subunit I
cydB cytochrome d terminal oxidase polypeptide subunit II
cysG siroheme synthase
cysK cysteine synthase A
dadA D-amino acid dehydrogenase small subunit
dadX alanine racemase
dctA C4-dicarboxylate transporter DctA
dmsA anaerobic dimethyl sulfoxide reductase chain A precursor
dmsB anaerobic dimethyl sulfoxide reductase subunit B
dmsC anaerobic dimethyl sulfoxide reductase subunit C
dnaJ chaperone protein DnaJ
dnaK molecular chaperone DnaK
envZ osmolarity sensor protein
epd erythrose 4-phosphate dehydrogenase
fadL long-chain fatty acid outer membrane transporter
fdnG FdnG, alpha subunit of formate dehydrogenase-N
fdnH formate dehydrogenase-N beta subunit
fdnI formate dehydrogenase-N subunit gamma
fixA putative electron transfer flavoprotein FixA
fixB putative electron transfer flavoprotein FixB
fixC putative oxidoreductase FixC
fixX putative ferredoxin
focA formate transporter
frdA fumarate reductase flavoprotein subunit
frdB fumarate reductase iron-sulfur subunit
frdC fumarate reductase subunit C
frdD fumarate reductase subunit D
fruA fructose-specific PTS system IIBC component
fruK 1-phosphofructokinase
fucA L-fuculose phosphate aldolase
fucO L-1,2-propanediol oxidoreductase
gadA glutamate decarboxylase alpha
gadB glutamate decarboxylase beta
gapA glyceraldehyde-3-phosphate dehydrogenase A
glnA glutamine synthetase
glnL nitrogen regulation protein NR(II)
glpA sn-glycerol-3-phosphate dehydrogenase subunit A
glpB anaerobic glycerol-3-phosphate dehydrogenase subunit B
glpC sn-glycerol-3-phosphate dehydrogenase subunit C
gmd subunit of GDP-mannose 4,6-dehydratase
groL chaperonin GroEL
groS co-chaperonin GroES
guaA bifunctional GMP synthase/glutamine amidotransferase protein
guaB inositol-5-monophosphate dehydrogenase
gyrA DNA gyrase subunit A
hupA transcriptional regulator HU subunit alpha
hupB transcriptional regulator HU subunit beta
hyaA hydrogenase-1 small chain precursor
hyaB hydrogenase 1 large subunit
hyaD hydrogenase 1 maturation protease
hyaF hydrogenase-1 operon protein HyaF
hybA hydrogenase 2 protein HybA
hybB putative hydrogenase 2 b cytochrome subunit
hybC hydrogenase 2 large subunit
hybD hydrogenase 2 maturation endopeptidase
hybF hydrogenase nickel incorporation protein HybF
hybG hydrogenase 2 accessory protein HypG
hycA formate hydrogenlyase regulatory protein HycA
hycB formate hydrogenlyase subunit 2
hycC formate hydrogenlyase subunit 3
hycD membrane-spanning protein of formate hydrogenase
hycE formate hydrogenlyase subunit 5 precursor
hycF formate hydrogenlyase complex iron-sulfur subunit
hycG formate hydrogenlyase subunit 7
hycH formate hydrogenlyase maturation protein HycH
ibpA heat shock protein IbpA
ibpB heat shock chaperone IbpB
icdA isocitrate dehydrogenase
lacY galactoside permease
lacZ beta-D-galactosidase
lldD L-lactate dehydrogenase
lldP L-lactate permease
lldR DNA-binding transcriptional repressor LldR
modA molybdate transporter periplasmic protein
modB molybdate ABC transporter permease protein
modC molybdate transporter ATP-binding protein
modF putative molybdenum transport ATP-binding protein ModF
moeA molybdopterin biosynthesis protein MoeA
mtlA mannitol-specific PTS system enzyme IIABC components
mtlD mannitol-1-phosphate 5-dehydrogenase
mtlR mannitol repressor protein
napA nitrate reductase
napB diheme cytochrome c550
napC cytochrome c-type protein NapC
napD assembly protein for periplasmic nitrate reductase
napG quinol dehydrogenase periplasmic component
napH quinol dehydrogenase membrane component
narK nitrite extrusion protein
nirB nitrite reductase [NAD(P)H] large subunit
nirC nitrite transporter NirC
nirD nitrite reductase small subunit
nmpC outer membrane porin protein NmpC precursor
nrfA cytochrome c nitrite reductase
nrfB cytochrome c-type protein NrfB
nrfD NrfD protein
nrfE heme lyase subunit NrfE
nrfF formate-dependent nitrite reductase complex subunit NrfF
nrfG formate-dependent nitrite reductase complex subunit NrfG
ompR osmolarity response regulator
oxyR DNA-binding transcriptional regulator OxyR
papB pap operon regulatory protein PapB
pckA phosphoenolpyruvate carboxykinase
pfkA 6-phosphofructokinase
pflB formate acetyltransferase 1
proP proline/glycine betaine transporter
putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
putP sodium/proline symporter
pykF pyruvate kinase
sbp sulfate transporter subunit
secB preprotein translocase subunit SecB
ssuD alkanesulfonate monooxygenase
tdcA DNA-binding transcriptional activator TdcA
tdcC threonine/serine transporter TdcC
tdcD propionate/acetate kinase
tdcE keto-acid formate acetyltransferase
tdcG L-serine dehydratase 1
uspB universal stress protein UspB
UTI89_C2334 tyrosine kinase
UTI89_C2444 bifunctional fructose-specific PTS IIA/HPr protein
UTI89_C2946 hypothetical protein
UTI89_C3419 hydrogenase 2 small subunit
UTI89_C4453 hypothetical protein
wcaA glycosyl transferase
wcaB putative colanic acid biosynthesis acetyltransferase WcaB
wcaC glycosyl transferase
wcaF putative colanic acid biosynthesis acetyltransferase WcaF
wcaG GDP-fucose synthetase chain A
wcaH mannose-1-phosphate guanylyltransferase (GDP)
wcaI glycosyl transferase
wza putative polysaccharide export protein
wzb tyrosine phosphatase
xasA amino acid antiporter
ybhA phosphotransferase
ycbM alkanesulfonate transporter permease subunit
ycbP NAD(P)H-dependent FMN reductase
yhaR hypothetical protein