Escherichia coli B171

All genes
Gene Product description NDA class
aceA isocitrate lyase Basal machinery
aceB malate synthase A Basal machinery
aceK isocitrate dehydrogenase kinase/phosphatase Basal machinery
acnA aconitate hydratase 1 3
acnB aconitate hydratase 2 Basal machinery
acsA acetate--CoA ligase Basal machinery
adhE aldehyde-alcohol dehydrogenase Basal machinery
aegA1 protein aegA Basal machinery
aldB aldehyde dehydrogenase B Basal machinery
alr1 alanine racemase Basal machinery
araA L-arabinose isomerase Basal machinery
araB L-ribulokinase Basal machinery
araD L-ribulose-5-phosphate 4-epimerase Basal machinery
arcA aerobic respiration control protein ArcA Global regulator
argR arginine repressor 22
aroF 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive 25
bglF PTS system, beta-glucoside-specific IIABC component 14
bioB biotin synthase 13
bioF 8-amino-7-oxononanoate synthase 13
birA bifunctional protein BirA 13
caiA crotonobetainyl-CoA dehydrogenase Basal machinery
caiB crotonobetainyl-CoA:carnitine CoA-transferase Basal machinery
caiD carnitinyl-CoA dehydratase Basal machinery
caiE carnitine operon protein caiE Basal machinery
caiF transcriptional activatory protein CaiF Global regulator
caiT L-carnitine/gamma-butyrobetaine antiporter Basal machinery
carA carbamoyl-phosphate synthase, small subunit 22
carB carbamoyl-phosphate synthase, large subunit 22
cbl notfproduct Global regulator
cirA colicin I receptor Basal machinery
cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase Basal machinery
crp catabolite gene activator Global regulator
crr PTS system, glucose-specific IIA component 1
csrA carbon storage regulator 5
cudC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC 17
cyaA adenylate cyclase, class I Basal machinery
cydA cytochrome d ubiquinol oxidase, subunit I Basal machinery
cydB1 cytochrome d ubiquinol oxidase, subunit II Basal machinery
cydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD 17
cysB HTH-type transcriptional regulator CysB 7
cysG siroheme synthase Basal machinery
cysK cysteine synthase A Basal machinery
cytR transcriptional repressor CytR 21
dadA D-amino acid dehydrogenase, small subunit Basal machinery
dctA aerobic C4-dicarboxylate transport protein 20
dcuB anaerobic C4-dicarboxylate transporter DcuB 20
dcuR transcriptional regulatory protein DcuR 20
dlgD 3-dehydro-L-gulonate 2-dehydrogenase Basal machinery
dmsA anaerobic dimethyl sulfoxide reductase, A subunit Basal machinery
dmsB_2 dimethylsulfoxide reductase, B subunit Basal machinery
dmsC1 anaerobic dimethyl sulfoxide reductase, C subunit Basal machinery
dnaA chromosomal replication initiator protein DnaA 16
dnaJ chaperone protein DnaJ Basal machinery
dnaK chaperone protein DnaK Basal machinery
dnaN DNA polymerase III, beta subunit 16
EcB171_0053 polysaccharide biosynthesis/export protein 23
EcB171_0066 IS2 transposase orfA Basal machinery
EcB171_0067 IS2 transposase orfB Basal machinery
EcB171_0172 cryptic beta-glucoside bgl operon antiterminator 14
EcB171_0174 6-phospho-beta-glucosidase 14
EcB171_0296 IS2 transposase orfA Basal machinery
EcB171_0426 formate hydrogenlyase maturation protein Basal machinery
EcB171_0456 notfproduct 11
EcB171_1077 H-NS histone family protein Global regulator
EcB171_1244 IS2 transposase orfB Basal machinery
EcB171_1245 IS2 transposase orfA Basal machinery
EcB171_2506 putative endoribonuclease L-PSP Basal machinery
EcB171_2647 IS2 transposase orfB Basal machinery
EcB171_2648 IS2 transposase orfA Basal machinery
EcB171_3589 transcriptional regulator, IclR family Global regulator
EcB171_3591 conserved hypothetical protein Basal machinery
EcB171_3593 TRAP transporter, DctM subunit Basal machinery
EcB171_3594 2,3-diketo-L-gulonate-binding periplasmic protein YiaO Basal machinery
EcB171_3627 putative L-lactate dehydrogenase operon regulatory protein LldR Basal machinery
EcB171_3706 putative crotonobetaine/carnitine-CoA ligase Basal machinery
EcB171_4159 IS2 transposase orfA Basal machinery
EcB171_4160 IS2 transposase orfB Basal machinery
EcB171_4819 biofilm PGA synthesis protein PgaA 5
EcB171_5162 IS2 transposase orfA Basal machinery
EcB171_5163 IS2 transposase orfB Basal machinery
EcB171_5221 IS2 transposase orfA Basal machinery
EcB171_5222 IS2 transposase orfB Basal machinery
EcB171_5304 NADPH-dependent FMN reductase Basal machinery
EcB171_5305 ABC transporter, periplasmic substrate-binding protein, aliphatic sulfonates family Basal machinery
EcB171_5307 putative sulfonate ABC transporter, permease protein Basal machinery
EcB171_5342 putative formate transporter FocA Basal machinery
EcB171_5724 conserved hypothetical protein 7
eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase Basal machinery
envZ osmolarity sensor protein EnvZ Basal machinery
epd D-erythrose-4-phosphate dehydrogenase Basal machinery
fdnH formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Basal machinery
fdnI formate dehydrogenase, gamma subunit Basal machinery
fecA iron(III) dicitrate transport protein FecA 6
fecB iron(III) dicitrate ABC transporter, periplasmic iron(III) dicitrate-binding protein FecB 6
fecC iron(III) dicitrate ABC transporter,permease protein FecC 6
fecD iron(III) dicitrate ABC transporter,permease protein FecD 6
fecE iron(III) dicitrate transport ATP-binding protein FecE 6
fecI RNA polymerase sigma factor FecI 6
fis DNA-binding protein Fis Global regulator
fixA protein FixA Basal machinery
fixB electron transfer flavoprotein, alpha subunit Basal machinery
fixC protein FixC Basal machinery
fixX ferredoxin homolog FixX Basal machinery
fnr fumarate and nitrate reduction regulatory protein Global regulator
frdA fumarate reductase, flavoprotein subunit Basal machinery
frdB fumarate reductase, iron-sulfur protein Basal machinery
frdC fumarate reductase, cytochrome b subunit Basal machinery
frdD fumarate reductase, D subunit Basal machinery
fruA PTS system, fructose-specific, IIBC component Basal machinery
fruB PTS system fructose-specific phosphotransferase enzyme IIA component Basal machinery
fruK 1-phosphofructokinase Basal machinery
fruR fructose repressor Global regulator
fucA L-fuculose phosphate aldolase Basal machinery
fucO lactaldehyde reductase Basal machinery
fumA fumarate hydratase 3
fumC fumarate hydratase 3
fur ferric uptake regulation protein 3
gadA glutamate decarboxylase GadA 11
gadB glutamate decarboxylase GadB 11
gadC glutamate:gamma aminobutyrate antiporter 11
gapA gIyceraldehyde-3-phosphate dehydrogenase Basal machinery
gcvA glycine cleavage system transcriptional activator 4
gcvH glycine cleavage system H protein 4
gcvP glycine dehydrogenase 4
gcvT glycine cleavage system T protein 4
glnA glutamine synthetase Basal machinery
glnL nitrogen regulation protein NR Basal machinery
glpA anaerobic glycerol-3-phosphate dehydrogenase subunit, A Basal machinery
glpB anaerobic glycerol-3-phosphate dehydrogenase, subunit B Basal machinery
glpC sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit Basal machinery
gntT high-affinity gluconate transporter Basal machinery
groL chaperonin GroL Basal machinery
groS chaperonin GroS Basal machinery
grpE co-chaperone GrpE Basal machinery
guaA GMP synthase Basal machinery
guaB inosine-5'-monophosphate dehydrogenase Basal machinery
gyrA DNA gyrase, A subunit Basal machinery
hmp flavohemoprotein Basal machinery
hupA DNA-binding protein HU-alpha Basal machinery
hupB DNA-binding protein HU-beta Basal machinery
hyaB nickel-dependent hydrogenase 1, large subunit Basal machinery
hyaC Ni/Fe-hydrogenase 1 B-type cytochrome subunit HyaC Basal machinery
hyaD hydrogenase 1 maturation peptidase HyaD Basal machinery
hyaE hydrogenase-1 expression protein HyaE Basal machinery
hyaF hydrogenase-1 operon protein HyaF Basal machinery
hyb0 hydrogenase-2 small chain Basal machinery
hybA hydrogenase-2 electron transfer subunit Basal machinery
hybB Ni/Fe-hydrogenase 2 b-type cytochrome subunit Basal machinery
hybC hydrogenase-2, large subunit Basal machinery
hybD2 hydrogenase 2 maturation peptidase Basal machinery
hybE hydrogenase-2 operon protein HybE Basal machinery
hybG hydrogenase assembly chaperone HybG Basal machinery
hycA formate hydrogenlyase regulatory protein HycA Basal machinery
hycB formate hydrogenlyase, subunit B Basal machinery
hycC formate hydrogenlyase, subunit C Basal machinery
hycD formate hydrogenlyase, subunit D Basal machinery
hycE formate hydrogenlyase, subunit E Basal machinery
hycF formate hydrogenlyase, subunit F Basal machinery
hycG formate hydrogenlyase, subunit G Basal machinery
hycI hydrogenase maturation peptidase HycI Basal machinery
hypA1 hydrogenase nickel insertion protein HypA Basal machinery
ibpA small heat shock protein IbpA Basal machinery
ibpB small heat shock protein IbpB Basal machinery
icd isocitrate dehydrogenase, NADP-dependent Basal machinery
iciA chromosome initiation inhibitor 16
ihfA integration host factor, alpha subunit Global regulator
lacY lactose permease Basal machinery
lexA LexA repressor 2.1
lldD L-lactate dehydrogenase Basal machinery
lldP L-lactate permease Basal machinery
lrp leucine responsive regulatory protein 4
lyx cryptic L-xylulose kinase Basal machinery
manX PTS system, mannose-specific IIAB component 1
melA alpha-galactosidase 19
melB melibiose carrier protein 19
melR melibiose operon regulatory protein 19
metA homoserine O-succinyltransferase 10
metC cystathionine beta-lyase 10
metF 5,10-methylenetetrahydrofolate reductase 10
metJ met repressor 10
mic transcriptional regulator Mic 1
modA molybdate ABC transporter, periplasmic molybdate-binding protein Basal machinery
modB molybdate ABC transporter, permease protein Basal machinery
modC molybdate ABC transporter, ATP-binding protein Basal machinery
modE transcriptional regulator ModE Global regulator
modF ABC transporter, ATP-binding protein Basal machinery
moeA molybdopterin biosynthesis protein MoeA Basal machinery
moeB molybdopterin synthase sulfurylase MoeB Basal machinery
mtlA PTS system, mannitol-specific IIABC component Basal machinery
mtlD mannitol-1-phosphate 5-dehydrogenase Basal machinery
mtlR mannitol operon repressor Basal machinery
nadA quinolinate synthetase complex, A subunit 12
nadB L-aspartate oxidase 12
nadR nicotinamide-nucleotide adenylyltransferase 12
napA periplasmic nitrate reductase, large subunit Basal machinery
napB periplasmic nitrate reductase, diheme cytochrome c subunit Basal machinery
napC cytochrome c-type protein napC Basal machinery
napD NapD protein Basal machinery
napF ferredoxin-type protein NapF 26
napG periplasmic nitrate reductase, NapG Basal machinery
napH periplasmic nitrate reductase, NapH Basal machinery
narG nitrate reductase 1, alpha subunit Intermodular
narH nitrate reductase 1, beta subunit 2.2
narI respiratory nitrate reductase 1, gamma subunit 2.2
narJ nitrate reductase molybdenum cofactor assembly chaperone 1 2.2
narK nitrite extrusion protein 1 Basal machinery
narL nitrate/nitrite response regulator protein NarL Global regulator
narP nitrate/nitrite response regulator NarP 26
narQ nitrate/nitrite sensor histidine kinase NarQ Global regulator
narX nitrate/nitrite sensor protein NarX 2.2
nhaR transcriptional activator protein NhaR 5
nirB nitrite reductase [NAD(P)H], large subunit Basal machinery
nirC nitrite transporter NirC Basal machinery
nirD nitrite reductase [NAD(P)H], small subunit Basal machinery
nrfA formate-dependent cytochrome c nitrite reductase, c552 subunit Basal machinery
nrfB cytochrome c nitrite reductase, pentaheme subunit Basal machinery
nrfC cytochrome c nitrite reductase, Fe-S protein Basal machinery
nrfD nrfD protein Basal machinery
nrfE cytochrome c-type biogenesis protein NrfE Basal machinery
ompR transcriptional regulatory protein OmpR Basal machinery
oxyR hydrogen peroxide-inducible genes activator Basal machinery
pckA phosphoenolpyruvate carboxykinase Basal machinery
pfkA 6-phosphofructokinase Basal machinery
pflB1 formate acetyltransferase Basal machinery
pflB2 formate acetyltransferase Basal machinery
pgaB biofilm PGA synthesis lipoprotein pgaB 5
pgaC biofilm PGA synthesis N-glycosyltransferase PgaC 5
pgaD biofilm PGA synthesis protein PgaD 5
phoA alkaline phosphatase 18
phoB phosphate regulon transcriptional regulatory protein PhoB 18
pnuC nicotinamide mononucleotide transporter PnuC 12
ppiA peptidyl-prolyl cis-trans isomerase A 21
ppsA phosphoenolpyruvate synthase 1
proP proline/betaine transporter Basal machinery
psiE phosphate-starvation-inducible E 18
purR transcriptional repressor PurR 4
putA bifunctional protein PutA Basal machinery
putP sodium/proline symporter Basal machinery
pykF pyruvate kinase I Basal machinery
rcsB capsular synthesis regulator component B 23
recA protein RecA 2.1
rhaA L-rhamnose isomerase 9
rhaB rhamnulokinase 9
rhaR transcriptional activator RhaR 9
rhaS HTH-type transcriptional activator RhaS 9
rpoD RNA polymerase sigma factor RpoD 1
rpoH alternative sigma factor RpoH Global regulator
rpoN RNA polymerase sigma-54 factor Global regulator
sbp sulfate-binding protein Basal machinery
secB protein-export chaperone SecB Basal machinery
sgbE L-ribulose-5-phosphate 4-epimerase sgbE Basal machinery
sgbH 3-keto-L-gulonate-6-phosphate decarboxylase SgbH Basal machinery
soxR redox-sensitive transcriptional activator SoxR 3
soxS regulatory protein SoxS 3
ssuB ABC transporter, ATP-binding protein Basal machinery
ssuD alkanesulfonate monooxygenase, FMNH(2)-dependent Basal machinery
surA chaperone/peptidyl-prolyl cis-trans isomerase SurA 17
tauB taurine ABC transporter, ATP-binding protein 7
tauC taurine uptake ABC transporter, permease protein 7
tauD taurine dioxygenase 7
tdcA transcriptional regulator TdcA Basal machinery
tdcB threonine dehydratase, catabolic Basal machinery
tdcC threonine/serine transporter Basal machinery
tdcD propionate kinase Basal machinery
tdcG L-serine ammonia-lyase TdcG Basal machinery
torA trimethylamine-N-oxide reductase 8
torC cytochrome c-type protein torC 8
torD chaperone protein TorD 8
torR notfproduct 8
tyrR transcriptional regulatory protein TyrR 25
udp uridine phosphorylase 21
uhpA transcriptional regulatory protein UhpA 24
uhpT hexose phosphate transport protein 24
uidA beta-glucuronidase UidA 15
uidB glucuronide permease uidB 15
uidR transcriptional regulator UidR 15
uxuA mannonate dehydratase 1
uxuB fructuronate reductase 1
ybhA phosphatase YbhA Basal machinery